Plant FIBer expression Database

Lus10035559 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03910 66 / 5e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035558
[exp]
181 / 3e-54 AT1G03910 870 / 0.0 unknown protein
Lus10027730
[exp]
153 / 9e-48 ND 328 / 7e-110
Lus10027731
[exp]
152 / 2e-43 AT1G03910 875 / 0.0 unknown protein
Lus10030000
[exp]
120 / 3e-32 AT1G03910 713 / 0.0 unknown protein
Lus10021530
[exp]
91 / 2e-23 AT1G03910 253 / 2e-81 unknown protein
Lus10027605
[exp]
82 / 5e-20 AT1G03910 242 / 4e-77 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G118700
[exp]
63 / 3e-12 AT1G03910 849 / 0.0 unknown protein
Potri.001G242900
[exp]
42 / 4e-05 AT1G03910 250 / 1e-76 unknown protein
PFAM info
Representative CDS sequence
>Lus10035559 pacid=23147511 polypeptide=Lus10035559 locus=Lus10035559.g ID=Lus10035559.BGIv1.0 annot-version=v1.0
ATGCAGAATCCCGCGCTCGAACGTGCACTTGAACCCCTTCTTGTGAGAGTACTCCCACTCCTTGTTCACTATCCGGTACGCGATATCCTCGTAAGGCGGT
CCAGCATGGAACGTGATGATGCACGTCTCGTCGCTGCTTCCATCCTTGTCGATCTTGTAGGTTGGAGCCTTGGTCTTGTCCACCAGGTCCGGGTAGAAGA
TGTTGAACTTGTATCCTTGAACGATCTTCGGTGGCGGGTTGTCGTGGTCGTAGTGAGTCTGGTTGTACTTGTTCCACTCGTAACCGGTGTGGACTCGGTT
GAAGTACTTTGGCTTCCTCGGCCTGTACTTGTCGTGCCACCAGTAAACTGCCGAGTCCAGATTCACTTCAGCTCCCGACCCAAACACCGCATCGCCTTCC
TCCATCACTCCCATGGCTTTAATGGCCTTCATCTCAAAGTTGTCCGCTGGTGGAAGAGGTGGTTTTGA
AA sequence
>Lus10035559 pacid=23147511 polypeptide=Lus10035559 locus=Lus10035559.g ID=Lus10035559.BGIv1.0 annot-version=v1.0
MQNPALERALEPLLVRVLPLLVHYPVRDILVRRSSMERDDARLVAASILVDLVGWSLGLVHQVRVEDVELVSLNDLRWRVVVVVVSLVVLVPLVTGVDSV
EVLWLPRPVLVVPPVNCRVQIHFSSRPKHRIAFLHHSHGFNGLHLKVVRWWKRWF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035559
[exp]
0 1
AT2G28910 CXIP4 CAX interacting protein 4 (.1) Lus10016543
[exp]
7.7 0.7671
AT5G02490 AtHsp70-2 Heat shock protein 70 (Hsp 70)... Lus10040304
[exp]
9.3 0.7586
AT5G03340 ATPase, AAA-type, CDC48 protei... Lus10023018
[exp]
13.3 0.7583
AT5G49910 CPHSC70-2EATSHO... HEAT SHOCK PROTEIN 70-7, chlor... Lus10035781
[exp]
14.3 0.7593
AT5G52510 GRAS SCL8 SCARECROW-like 8 (.1) Lus10027505
[exp]
18.6 0.7420
AT3G08970 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1... Lus10002852
[exp]
19.9 0.7091
AT3G46450 SEC14 cytosolic factor family ... Lus10004952
[exp]
25.2 0.7292
AT3G01780 TPLATE ARM repeat superfamily protein... Lus10014611
[exp]
31.0 0.5978
AT3G09350 Fes1A Fes1A (.1.2.3) Lus10003961
[exp]
37.0 0.7364
AT5G35320 unknown protein Lus10027608
[exp]
37.8 0.7070

Lus10035559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.