Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10060 296 / 3e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G20810 95 / 9e-24 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 76 / 3e-17 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 77 / 6e-17 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT5G48570 77 / 5e-16 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 75 / 2e-15 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT2G43560 71 / 8e-15 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G39710 71 / 9e-15 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT3G25230 71 / 7e-14 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G12340 67 / 8e-13 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027729 [exp] 361 / 1e-127 AT3G10060 285 / 1e-97 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10016037 [exp] 95 / 1e-23 AT1G20810 258 / 2e-87 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 83 / 3e-18 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10006949 [exp] 79 / 1e-17 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10031700 [exp] 81 / 2e-17 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10024735 [exp] 76 / 6e-17 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10025158 [exp] 77 / 1e-16 AT1G20810 236 / 3e-78 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10022507 [exp] 75 / 3e-16 AT4G39710 270 / 8e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10016811 [exp] 75 / 3e-16 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096600 [exp] 303 / 3e-105 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G254900 [exp] 86 / 3e-20 AT1G20810 272 / 5e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 83 / 3e-18 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 78 / 2e-16 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G149400 [exp] 77 / 4e-16 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 76 / 1e-15 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.001G075500 [exp] 71 / 7e-15 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.017G017500 [exp] 66 / 1e-12 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 64 / 3e-12 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 64 / 3e-12 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10035560 pacid=23147518 polypeptide=Lus10035560 locus=Lus10035560.g ID=Lus10035560.BGIv1.0 annot-version=v1.0 ATGGAAGTCTCTCTTTTCCACAGCAGCTCAGTTCTTCTCCTAACCAAGGAGCTTCCTTCCTCCTCTTCTACTAATCTCATCCCAACAGGGAGGAGCCAGT CCATCAGAGGAAGAAGAAGAAGAAGAAGAGGGATTTTGTTCCCATGTAGCTGTTCATTGTCTTCTCCAGATGAGATCAAAAAGGGAAGGAGAGAGCTTAT TGGGTGTCTTATTGCTTCAGCTGCTGGGATTGTTGTATCTGATGCTGCTAATGCTGTTAGTACCAGCAGGAGAGCTCTTAAAGGATCAAAGGTGCCTGAG AGTGAATTCACAACTCTTGATAATGGTCTCAAGTACTATGATCTCAAGGTTGGAGGAGGACCAGAAGCTGTGAAGGGATCTCGGGTTGCAGTCCACTATG TTGCCAAATGGAAAGGGATTACATTCATGACAAGTAGACAAGGACTTGGTGTTGGCGGTGGAACTCCCTATGGATTTGATGTTGGACAGTCTGAAAGAGG CGCGGTCCTTAAGGGGTTAGACCTCGGAGTCATAGGAATGCGCGTTGGTGGTCAGCGTTTGCTGATAGTTCCTCCGGAGCTGGCATATGGAAACAAAGGA GTTCAGGAGATTCCTCCAAATGCAACCATTGAGTTTGATGTGGAACTTCTGGCCATCAAGCAAAGTCCATTTGGGTCTGCTGTGAAAGTAGTCGAAGGAT AG
AA sequence Show only first row Show all	>Lus10035560 pacid=23147518 polypeptide=Lus10035560 locus=Lus10035560.g ID=Lus10035560.BGIv1.0 annot-version=v1.0 MEVSLFHSSSVLLLTKELPSSSSTNLIPTGRSQSIRGRRRRRRGILFPCSCSLSSPDEIKKGRRELIGCLIASAAGIVVSDAANAVSTSRRALKGSKVPE SEFTTLDNGLKYYDLKVGGGPEAVKGSRVAVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGQSERGAVLKGLDLGVIGMRVGGQRLLIVPPELAYGNKG VQEIPPNATIEFDVELLAIKQSPFGSAVKVVEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	2.4	0.8834
AT5G02160			unknown protein		Lus10024373 [exp]	4.4	0.9085
AT2G32750			Exostosin family protein (.1)		Lus10010677 [exp]	8.4	0.8306
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	8.7	0.8524
AT5G41761			unknown protein		Lus10000541 [exp]	9.5	0.8495
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	9.6	0.8400
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001741 [exp]	9.6	0.8961
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	11.6	0.8375
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	12.0	0.8839
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	13.0	0.8964

Compare expression of checked genes

Lus10035560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.