Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36370 780 / 0 ubiquitin-protein ligases (.1) AT4G15475 67 / 4e-11 F-box/RNI-like superfamily protein (.1) AT5G23340 45 / 0.0003 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027728 [exp] 185 / 2e-48 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10012764 [exp] 59 / 1e-08 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 50 / 1e-05 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 47 / 8e-05 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10028645 [exp] 45 / 0.0002 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10018942 [exp] 45 / 0.0002 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10012214 [exp] 45 / 0.0003 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10002014 [exp] 45 / 0.0004 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G074700 [exp] 49 / 1e-05 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.005G088800 [exp] 47 / 4e-05 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 47 / 7e-05 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.003G179100 [exp] 45 / 0.0002 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 45 / 0.0002 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 45 / 0.0003 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF07707 [flax] [poplar] BACK BTB And C-terminal Kelch CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10035561 pacid=23147629 polypeptide=Lus10035561 locus=Lus10035561.g ID=Lus10035561.BGIv1.0 annot-version=v1.0 ATGGACTCAAGTTCCGAGGATTTTATTCTTCTTCATTTCACTAACTCGAGTCCGATAGAACCGACGGCCGACGGTGGAGAAACTCTCATGTTAACGACAG ACATGGATAGCTGGGACTTACCAACACTCCTACATTACCGGACTATCAAAATCCAAGCTCATCGAGCCAGGCTTGTTGAATGTTGCTCATATTTCCACGG CCTGCTCTGTGGAAGCTTTCGTGAATCGAACCTGAATGGTGTTTACATCGAGTGGAGCTTGGAGTCCTTTGTAAGCGTTTTGAAGTGTGTATATTGCTCT TCCAGCTCGGTCGATGTGAAATCTCAAAATTTTATTTCTCTTCTTGAGGCTGCTATGTACTTTGGAGAAGAGACACTTCTCTTGAAGTGCAAGGAATGGA TTTATAAGATTGTTCTGTCCATGGAATCAGAGTTGGATGAAATGGAATTGGACGATCTGATCAATTTTTGGAACTTTGGTCATGAAAATGCAATAGATTT CCTTCCAGAATTGTGTGCTGCCTATCTTGCCAGAAATTTCATGTTGGTGCAGCCTAGTAAATCTTTCCGAGATGTCCCGTTTACTTTACTACTGTCTGGA ATTAAGCATCCTAATTTGACGATAGAAAGTGAGAAGCATCTATCCTCTGCACTGTTACAGTGGCTTGGTGATTTTGAACAGTTAGATTCTTCGACCAAAG TTGAAAATGTGTGTTCTGAAGTTCTAAAGGAGATTCGAGGTTGTCTGTTGCCATTGCCATTTGTTGCAGGAAAGAGACGTTCATGTTACTTGTCAGAGCT TGCTGATGAGAGTACTGAGGCAATCTTTAGACTGTTGAAAGTTCCTCCTGAACGAATGATGGATTCCTTGGACCATGCTTACTCTGAAATGTTTCGAATA CGGTTGACAGAATACTCCAAGAGGGTTGACCTTTCGGGTTGTCCGCACATTACATCAGCCATTCTACTGCTATCCTTGCTTCCTTATTCATTTACCATGG ACCGTAAATCAAAAAATAGTTTTGTAGAATATATAGTTAACCTTGAACGTTACAGCAAAAACCAGAGTCAAGTCTCCAAGTGTTTGCTGCCTACTCTCTC CTTTGGTGCCATCGAAGAGGTGGATGTATCAAAATGTCGAAGTTTACATCTTGAAGCTGCCATAGAGTGCTTCGTCCTATCATTTCCATCTCTGAGAAAA GTAAAAGCGGCTTATCTTTTGAACTTCAAGAAAAGCACACTTCATAAGTTGCTGGAGAAGTGCCCTCGCATAAATGAAGTTGACTTGACTGTTGATTCTA CTCCGCTTATACCAGGAAAAGTGTCTGTTTTATCTTCTACTCCTGTTATATCAACGGCATCAACCATTTTGTACGCTAGAGGTCTTGATTCTCTGTACAA TATCACAAGCCTCACTCTAGAGGGTCGCAGTGATATCTGCGATCTGGACCTTCAGCACGTGTCAAAGCTCTGTGTAACTTTGCTTCATCTTAACCTCAAG GCCTGTATTTCAGTTACAGACATTGGACTAGCGAATCTGATATGCAGATGTATCCACCTAAATTCTCTGTTAGTTTGTGATACATCATTCAGCATGAACT CTGTTTCCGCTCTTTGTTCAGTCACTGGTACTCTTGGTACTTCTTCTGCTTCATACCATGAAAAGAGAGATTACCCTTTAACAGCGAAGCTTCAGACACT TCACTTGGGTGGCTGTAAGGGTGTTAGTGAGGGGTCCTTACTCGAGCTATTATCTCAAACAACGGCATTGAAGAATCTTTGCACGAGGGACACGTACCTT ACAGACACAGCTCTTTTTAGTTTCCCTGGTTCTTCCCTCGAAACACTCGATGTTTCTAATACCAAGATATCTGGAGCTTCTTTGTTTCACGTTGTACATG CCAATCCTACTTTGAAGTGTCTGAATGTAAGGGGCTGTAGCAATTTGGCTGAACAAGAAAGTATCCCCCATTCAATTGGAGACTTATATGCTGAGCTCGG AGAGAAATGCATTTTGGAAGAGATTTCTCTTGGCTGGGGTTTCTCCTGCTCTGCATTCCAAGCACTCAGACCTGGAATCGCATCATTAAGATCGTTGACA ATTGGATTGGGTGCATCATTAAGTGAGGAGACACTTAGAGGGCTCCCTATAACATGTCCGATGCTGAATGCATTAGTCCTTTATTTTCAGGCGATATCTG ATGAGGTCATTGTAAGCATTACAACTTCGTTGAGGTCCTTGCAAACGCTGGCTTTATACTACTGTCTCGGTGATATTTCCATTTCAAGTTTCAGACTTCC CTTGCCACACTTAGCGAAATTAAGGCTTCAAAGAGTCACTCCTTGGATGACAAACAATGAATTGTCAGTTCTTGCTCGACATTACCCCAATTTGGAGGAA CTGTCGTTGGTTGGATGCAGGCTTCTCGATTCAGATTCTTTGCGAGTGATTTCACGAGGATGGCCTGGCTTGACCTCCATCCATCTTGAGGAATGCGGAA GTGTAACAGCAAGTGATATTTCTCCGCTCTTCCACTGCGTAGCCCTTGAAGATATCTTGCTGCGTCATAATGGGGCTGGGATTAGTAAAGGCTTTATTCT TGATGCTGCTGCAAAGTTACCACTGCTTCGAAAGGTATCGCTGGACCTATGCGATGCCCGTGAAGGCGGCTTTGATCTTCCAGAATTTGCTGACAAGTGC TTTTTGAGTAGCGTGAAGATAGCGAGATGCGGCAAGATGCAGAAATGTGGTGCAAACCTTGGACGGCTTGTTCATAAGGAAACGTTGGTGTTGGTATGGG ACAGTGAACGTTTCAGTAGGACAGTGATTAAAGAGAGAATCTAA
AA sequence Show only first row Show all	>Lus10035561 pacid=23147629 polypeptide=Lus10035561 locus=Lus10035561.g ID=Lus10035561.BGIv1.0 annot-version=v1.0 MDSSSEDFILLHFTNSSPIEPTADGGETLMLTTDMDSWDLPTLLHYRTIKIQAHRARLVECCSYFHGLLCGSFRESNLNGVYIEWSLESFVSVLKCVYCS SSSVDVKSQNFISLLEAAMYFGEETLLLKCKEWIYKIVLSMESELDEMELDDLINFWNFGHENAIDFLPELCAAYLARNFMLVQPSKSFRDVPFTLLLSG IKHPNLTIESEKHLSSALLQWLGDFEQLDSSTKVENVCSEVLKEIRGCLLPLPFVAGKRRSCYLSELADESTEAIFRLLKVPPERMMDSLDHAYSEMFRI RLTEYSKRVDLSGCPHITSAILLLSLLPYSFTMDRKSKNSFVEYIVNLERYSKNQSQVSKCLLPTLSFGAIEEVDVSKCRSLHLEAAIECFVLSFPSLRK VKAAYLLNFKKSTLHKLLEKCPRINEVDLTVDSTPLIPGKVSVLSSTPVISTASTILYARGLDSLYNITSLTLEGRSDICDLDLQHVSKLCVTLLHLNLK ACISVTDIGLANLICRCIHLNSLLVCDTSFSMNSVSALCSVTGTLGTSSASYHEKRDYPLTAKLQTLHLGGCKGVSEGSLLELLSQTTALKNLCTRDTYL TDTALFSFPGSSLETLDVSNTKISGASLFHVVHANPTLKCLNVRGCSNLAEQESIPHSIGDLYAELGEKCILEEISLGWGFSCSAFQALRPGIASLRSLT IGLGASLSEETLRGLPITCPMLNALVLYFQAISDEVIVSITTSLRSLQTLALYYCLGDISISSFRLPLPHLAKLRLQRVTPWMTNNELSVLARHYPNLEE LSLVGCRLLDSDSLRVISRGWPGLTSIHLEECGSVTASDISPLFHCVALEDILLRHNGAGISKGFILDAAAKLPLLRKVSLDLCDAREGGFDLPEFADKC FLSSVKIARCGKMQKCGANLGRLVHKETLVLVWDSERFSRTVIKERI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	3.2	0.8286
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	8.1	0.7548
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	11.1	0.7911
AT4G10930			unknown protein		Lus10032402 [exp]	11.2	0.7866
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	12.2	0.7735
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	12.3	0.7843
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	12.8	0.7079
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10035857 [exp]	13.7	0.7583
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	15.2	0.7612
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	17.0	0.7644

Compare expression of checked genes

Lus10035561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.