Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21110 273 / 4e-96 G10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014385 [exp] 289 / 2e-102 AT4G21110 271 / 2e-95 G10 family protein (.1) Lus10023881 [exp] 289 / 3e-102 AT4G21110 271 / 3e-95 G10 family protein (.1) Lus10027728 [exp] 306 / 3e-101 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147000 [exp] 270 / 9e-95 AT4G21110 244 / 1e-84 G10 family protein (.1) Potri.004G186600 [exp] 266 / 4e-93 AT4G21110 239 / 1e-82 G10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01125 [flax] [poplar] G10 G10 protein
Representative CDS sequence Show only first row Show all	>Lus10035562 pacid=23147690 polypeptide=Lus10035562 locus=Lus10035562.g ID=Lus10035562.BGIv1.0 annot-version=v1.0 ATGCCAAAGGTGAAGACAAATCGTGTCAATTACCCAGAGGGCTGGGAATTGATCGAGCCTACTCTTCGCGAACTACAGGCGAAGATGAGAGAAGCTGAGA ATGAGTCGCATGATGGTAAGAGGAAGTGCGAGGCACTATGGCCTATTTTCAAAATAGCACATCAGAAGAGCCGCTATATCTTTGACCTTTACCATCGGAG GAATGAGATATCAAAGGAGTTGTACGAGTTCTGCCTTGATCAAGGTTACGGGGACCGTAATCTCATTGCAAAGTGGAAGAAGGCTGGTTACGAGCGGTTA TGCTGCTTAAGGTGCATACAGCCAAGGGACCATAACTATGCAACTACATGTGTATGTAGAGTGCCTAAGAACATGAGGGAGGAAGAGGTCATAGAATGCG TGCATTGCGGTTGCAAGGGCTGTGCAAGTGGAGACTGA
AA sequence Show only first row Show all	>Lus10035562 pacid=23147690 polypeptide=Lus10035562 locus=Lus10035562.g ID=Lus10035562.BGIv1.0 annot-version=v1.0 MPKVKTNRVNYPEGWELIEPTLRELQAKMREAENESHDGKRKCEALWPIFKIAHQKSRYIFDLYHRRNEISKELYEFCLDQGYGDRNLIAKWKKAGYERL CCLRCIQPRDHNYATTCVCRVPKNMREEEVIECVHCGCKGCASGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21110			G10 family protein (.1)		Lus10035562 [exp]	0	1
AT2G03830		RGF8	root meristem growth factor 8,...		Lus10036830 [exp]	9.2	0.8916
AT5G53650			unknown protein		Lus10008848 [exp]	9.5	0.8744
AT5G50090			unknown protein		Lus10004229 [exp]	11.0	0.8690
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	11.6	0.8631
AT5G37290			ARM repeat superfamily protein...		Lus10013386 [exp]	15.6	0.8913
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	23.8	0.8816
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	25.0	0.8859
AT4G39900			unknown protein		Lus10024045 [exp]	30.2	0.8853
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	36.8	0.8659
AT3G52390			TatD related DNase (.1.2)		Lus10013590 [exp]	36.9	0.8535

Compare expression of checked genes

Lus10035562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.