Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36410 213 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 205 / 3e-68 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G09980 204 / 7e-68 Family of unknown function (DUF662) (.1) AT5G03660 174 / 7e-56 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G27740 152 / 4e-47 Family of unknown function (DUF662) (.1) AT3G52900 134 / 2e-40 Family of unknown function (DUF662) (.1) AT2G36355 116 / 2e-33 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027724 [exp] 283 / 1e-98 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 232 / 3e-78 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10023876 [exp] 222 / 4e-75 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10019529 [exp] 172 / 5e-55 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 168 / 2e-53 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10034160 [exp] 120 / 1e-34 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 116 / 2e-32 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115400 [exp] 214 / 6e-72 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.009G147500 [exp] 164 / 8e-52 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 155 / 2e-48 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 150 / 1e-46 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10035563 pacid=23147407 polypeptide=Lus10035563 locus=Lus10035563.g ID=Lus10035563.BGIv1.0 annot-version=v1.0 ATGGCAGAGACTCAGCCTCCTCCTCAACCTCAACCTCAACCTCAAACTCCTCAGCCGTTGAATCAGCTGATGGTTCAGACATCCGGGAGCTTGAGCTTCA GCAGCCAGATGTCCAAGGAAGATGAGGAGATGTCTAGGTCTGTGCTCTCCAACTTCAGGGCTAAAGAGGAAGAGATTGAGAGGAAGAGGACTGAAGTTAG GGAAAGGGTTCAAGCTCAGCTTGGCCGTGTTGAGGAAGAGACCAAGCGTTTGGCCTTGATTCGTGAGGAGCTGGAATCTCTGGCCGATCCAATGAGGAAA GAAGTTGGGATTGTGAGGAAGAGGATTGATACAGTGAACAAGGAATTGAAACCACTAGGAACTACAGTCCAGAAGAAGGAGAAAGAGTACAAGGATGCAC TTGAGGCCTTCAATGATAAGAACAAGGAGAAAGTACAGCTCATCACCAAGCTAATGGAGCTGGTCCACGAAAGCGAGAGGCTGAGGTTGAAGAAGCTGGA GGAACTGAGTAAGAGCATAGATTCCGCTCGCGGCGTGTCTACTGACTGA
AA sequence Show only first row Show all	>Lus10035563 pacid=23147407 polypeptide=Lus10035563 locus=Lus10035563.g ID=Lus10035563.BGIv1.0 annot-version=v1.0 MAETQPPPQPQPQPQTPQPLNQLMVQTSGSLSFSSQMSKEDEEMSRSVLSNFRAKEEEIERKRTEVRERVQAQLGRVEEETKRLALIREELESLADPMRK EVGIVRKRIDTVNKELKPLGTTVQKKEKEYKDALEAFNDKNKEKVQLITKLMELVHESERLRLKKLEELSKSIDSARGVSTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	0	1
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	1.0	0.9042
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	4.7	0.8927
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	6.7	0.8772
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	7.9	0.8622
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10042929 [exp]	8.5	0.8283
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	9.4	0.8631
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	9.5	0.8818
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000353 [exp]	11.5	0.8584
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	14.8	0.8595
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	15.9	0.8455

Compare expression of checked genes

Lus10035563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.