Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18150 71 / 1e-13 RNI-like superfamily protein (.1) AT3G58900 66 / 6e-12 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G59200 66 / 1e-11 F-box/RNI-like superfamily protein (.1) AT3G58880 64 / 3e-11 F-box/RNI-like superfamily protein (.1) AT5G02930 64 / 5e-11 F-box/RNI-like superfamily protein (.1) AT5G02910 63 / 6e-11 F-box/RNI-like superfamily protein (.1.2) AT4G13960 63 / 7e-11 F-box/RNI-like superfamily protein (.1) AT5G60610 61 / 2e-10 F-box/RNI-like superfamily protein (.1) AT3G59000 61 / 3e-10 F-box/RNI-like superfamily protein (.1.2) AT5G18780 59 / 1e-09 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029433 [exp] 282 / 2e-93 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10014161 [exp] 235 / 7e-75 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006513 [exp] 229 / 5e-73 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 211 / 5e-64 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027244 [exp] 194 / 4e-59 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10023776 [exp] 180 / 2e-54 AT3G51630 61 / 6e-10 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10027258 [exp] 179 / 4e-54 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10020292 [exp] 176 / 3e-52 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10038935 [exp] 171 / 1e-50 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 97 / 6e-23 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 77 / 6e-16 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104100 [exp] 63 / 4e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 62 / 7e-11 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 62 / 1e-10 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 61 / 3e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 61 / 4e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 59 / 1e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 57 / 6e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G098700 [exp] 56 / 2e-08 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10035564 pacid=23147562 polypeptide=Lus10035564 locus=Lus10035564.g ID=Lus10035564.BGIv1.0 annot-version=v1.0 ATGATGATTGATGACAGAAGAATTGATAGACTGAGTGCTCTCCCTGACGATGTTTTGCATCACATTCTATCCTTCATCGACACTAAATCTTCCGTTCAAA CCAGCATTTTGTCTAGGAGATGGACATCCGTATGGAAATATGTTCACGTTCTTGCTTTCGATGTGAGCGCTGATCAGAGTATGGAGCAGTTTGTGGACCG AGTTCTATCCCTCCGTTCGGGCAGTAGTAAGGTTGGCAGGATTGCAGTCAGGTCCGCGACCATGGATCTGTTGGATAGGATCGCGAAATACGCCGCTTCT CATGGCGTTCGAGAGCTACTCATTTCTCCTCCCTCTTACAACTTTCGGGATGTCTTCGGATTGGTACACGCCTGTCATCATTCCCTGAAAGTTCTGCATT TGGTAGCAACAATGTTTCCAGATGCTCATGATCATCAATTTTGGTCTTGTTTGCAAATGCTTGAATCTCTTACTCTAACTAGTTGCTGCCTTAGTTCGGG TGATGTTGCCTTTGGTAATTTACCCAGATTGGAAAGCCTAAAGCTCTTTGCTTGTGTTTCTTATTATTATCAACGGGAAAGTGTTCTTCCGAAAGTAACT GGACCCGAACTGCTTAACTTGGAGATTGTTGCGCCGGCAACTGTCGATTTTGAAATAGTCGCTCCCAAGCTCCAATCTTTCACTCTTAAGATTGGTCAGT TACGTGGAATGAAACGAGTGTTCAAGTCAAAACTTCCTTTCCTTAATCGTGCGAACATAAAGTTGTTTGGTTACATGAATTTGTTTTGCGACGGTACTTA TTCTAGTGACAATGATGCCAAGAAGAAACGGGTGCTCAGGTGGTGTGTAAACTTATTCAAGATTCTGTATAATGTACGAGTTCTCAATCTGGAGGTTGAA ACTTTTGAGCCATACTGGAGTGTTAGGTATGCAAACTCGTAG
AA sequence Show only first row Show all	>Lus10035564 pacid=23147562 polypeptide=Lus10035564 locus=Lus10035564.g ID=Lus10035564.BGIv1.0 annot-version=v1.0 MMIDDRRIDRLSALPDDVLHHILSFIDTKSSVQTSILSRRWTSVWKYVHVLAFDVSADQSMEQFVDRVLSLRSGSSKVGRIAVRSATMDLLDRIAKYAAS HGVRELLISPPSYNFRDVFGLVHACHHSLKVLHLVATMFPDAHDHQFWSCLQMLESLTLTSCCLSSGDVAFGNLPRLESLKLFACVSYYYQRESVLPKVT GPELLNLEIVAPATVDFEIVAPKLQSFTLKIGQLRGMKRVFKSKLPFLNRANIKLFGYMNLFCDGTYSSDNDAKKKRVLRWCVNLFKILYNVRVLNLEVE TFEPYWSVRYANS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58900			F-box/RNI-like superfamily pro...		Lus10035564 [exp]	0	1
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	1.0	0.8483
AT5G25500			unknown protein		Lus10002031 [exp]	9.1	0.8068
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	13.4	0.7590
AT5G43400			Uncharacterised conserved prot...		Lus10013399 [exp]	14.5	0.7846
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	15.1	0.8028
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	17.9	0.7986
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10006020 [exp]	18.6	0.8046
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	19.9	0.7872
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10005989 [exp]	21.0	0.7145
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10004663 [exp]	23.4	0.7082

Compare expression of checked genes

Lus10035564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.