Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03670 171 / 4e-47 unknown protein AT2G36420 115 / 1e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027723 [exp] 647 / 0 AT5G03670 236 / 2e-71 unknown protein Lus10014378 [exp] 249 / 9e-77 AT5G03670 246 / 3e-75 unknown protein Lus10023875 [exp] 246 / 3e-75 AT5G03670 231 / 2e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115300 [exp] 169 / 4e-46 AT5G03670 199 / 4e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035565 pacid=23147473 polypeptide=Lus10035565 locus=Lus10035565.g ID=Lus10035565.BGIv1.0 annot-version=v1.0 ATGGCGACGACAAATAATTCCCATCACAACCAGAAGCGCTTACTACACGAGCTCCTCCAAGACGACCAGGAACCGTTCCTCCTCCACGCCTACATTTCCG ACCGCCGCCGCCAAATCGTCCGAACCCGACCCAAACCACCACCGTCCGCCGCCGTCAAGAAGCGGAAACCAATCTCTCAGCATATCATCCCCCATGACAG CAAACCCGCCAGAAGCTCCTCTTGCTTCTTCTCCTTCGCCGCCGCCGCCGCCAGCTCCCCAGCCGCCGACCCGCGGAAGTCCCCTCTTTATTTCGGGAAA ACATCTCCACTAACCGCCAGCCCGAAAACGGCGTCGTTACTCCTCGAAGCGGCCCTCCGAATCTCCCGCAATATGCAAGCCCGTGGCGGCAGTAACAGAG GGACCGGGATTTTCGGGTCGCTGGTGAAACGGCTGACTAACGGCGGTAGGAAGAATAAGACCAAGAAAACAGACGGCGTTAAGGTGAACTCTGTTAAGGA TTATTCTCCCGTTGTCGTTGGACGGAGGACGAGATCGAAGCCGTCACCGTCTACTTTAAGGGGGCCCAGTTGGACGGAGAGTAGTAGCAGATTATCTGAT GATGAGTATGAGTTCGCTAATGAAATGTTCGAGTTCGCAGCTTTCGAAGACAAGCGTTACTGTGACAGTCCTTTCCATTTCGTGCTTCAGCCGCAAGATG GTAGCCGGACTCCGGATTTCTCGTCGCCGGCCGCCTCTCCAATCCGCCTCAAAGCAGAGGGGAATGAGAATAACAAGGATGGTAGCTTGAGGAAGTGCCA AATACAGAAACAACAAGCCAAAACTGATGCTGATGCTGATGCCGAAGAGAAAGAGCAATGTAGCCCAGTTTCAGTATTGGACCCACCGTTCGATGATGAA GAAGATGACGATCCGACGGAGGACGGCGGTTTTGATAATCTGGACTGCAGCTACGCGTTTGTACAGAGAACAAAGCAACACTTGCTGCACAAGCTCTGTA GATTCGAGAAGCTCGCGGAGCTTGATCCAATCGAGCTGGACAAGCTCATGCTCGACCACGAGCAAGAAGGAGAAGAAGACACTACTACTGTTACGGAGCG AAAGAGGAGCCACGATGACATTGATGAATTCGTGATGGATGAGCTCAGCAAATCGAGGAATAATAAGATCCCACGAGACATGAAGATGTTGGTGTCTGAC CTCATCGACGAGGAAGAAAACTATCAGCAAGAATCTCATCAGATCCACAACGACTCTATAATAGGTCATCAAGTGGTGGCGAAAAGGGTGTGCAAGAGGT TCGAGTCGTGGAAGGAAGTCGAATCGAACACGATCGACATGATGGTGGAGCAGGACTTCGACCGGTCACAAGGCGAGTGGAGAAGGAAACAAGATGAAGT GGATGACATTGCCATGGATATTGAAGTTGCCATCTTTGGCTTGTTGGTTGAAGAGTTATCAGAGGAGTTGACTCTCTGA
AA sequence Show only first row Show all	>Lus10035565 pacid=23147473 polypeptide=Lus10035565 locus=Lus10035565.g ID=Lus10035565.BGIv1.0 annot-version=v1.0 MATTNNSHHNQKRLLHELLQDDQEPFLLHAYISDRRRQIVRTRPKPPPSAAVKKRKPISQHIIPHDSKPARSSSCFFSFAAAAASSPAADPRKSPLYFGK TSPLTASPKTASLLLEAALRISRNMQARGGSNRGTGIFGSLVKRLTNGGRKNKTKKTDGVKVNSVKDYSPVVVGRRTRSKPSPSTLRGPSWTESSSRLSD DEYEFANEMFEFAAFEDKRYCDSPFHFVLQPQDGSRTPDFSSPAASPIRLKAEGNENNKDGSLRKCQIQKQQAKTDADADAEEKEQCSPVSVLDPPFDDE EDDDPTEDGGFDNLDCSYAFVQRTKQHLLHKLCRFEKLAELDPIELDKLMLDHEQEGEEDTTTVTERKRSHDDIDEFVMDELSKSRNNKIPRDMKMLVSD LIDEEENYQQESHQIHNDSIIGHQVVAKRVCKRFESWKEVESNTIDMMVEQDFDRSQGEWRRKQDEVDDIAMDIEVAIFGLLVEELSEELTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03670			unknown protein		Lus10035565 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	1.0	0.9551
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	3.9	0.9180
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	4.5	0.9219
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	4.9	0.9206
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	5.3	0.9028
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10000395 [exp]	5.4	0.8838
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	5.5	0.9206
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	7.3	0.9151
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	8.4	0.9150
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	8.8	0.9059

Compare expression of checked genes

Lus10035565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.