Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 342 / 4e-112 Ankyrin repeat family protein (.1) AT5G04700 225 / 1e-66 Ankyrin repeat family protein (.1) AT5G35810 211 / 2e-64 Ankyrin repeat family protein (.1) AT5G04680 214 / 3e-62 Ankyrin repeat family protein (.1) AT5G04730 211 / 6e-62 Ankyrin-repeat containing protein (.1) AT5G04690 210 / 3e-61 Ankyrin repeat family protein (.1) AT3G54070 202 / 9e-59 Ankyrin repeat family protein (.1) AT4G03500 54 / 2e-07 Ankyrin repeat family protein (.1) AT3G09550 53 / 2e-07 Ankyrin repeat family protein (.1) AT3G12360 50 / 2e-06 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027721 [exp] 546 / 0 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10038357 [exp] 260 / 5e-79 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10019887 [exp] 254 / 3e-76 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10014030 [exp] 217 / 6e-63 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10003282 [exp] 140 / 1e-35 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10014031 [exp] 125 / 8e-35 ND 146 / 2e-42 Lus10014701 [exp] 128 / 2e-31 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10000489 [exp] 126 / 2e-31 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10016672 [exp] 117 / 1e-27 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057900 [exp] 418 / 5e-141 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.007G110000 [exp] 418 / 9e-141 AT3G18670 404 / 2e-133 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 286 / 5e-89 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 284 / 5e-89 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.008G022900 [exp] 286 / 7e-89 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 284 / 7e-88 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.008G023400 [exp] 261 / 3e-82 AT5G04700 336 / 8e-109 Ankyrin repeat family protein (.1) Potri.015G125000 [exp] 266 / 6e-81 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 236 / 9e-71 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1) Potri.006G062900 [exp] 231 / 2e-69 AT3G18670 280 / 4e-86 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035567 pacid=23147343 polypeptide=Lus10035567 locus=Lus10035567.g ID=Lus10035567.BGIv1.0 annot-version=v1.0 ATGCATGGCTTCCAGCTGGATCAACCCCTGGCGGGTCAACAGTCAACGGCGACACCGACTACGTCTGCAACCTCCGGCTTCGCCGAGCCCTTGATGGCGG CGACTGGGAGACGTCAAAGCGACTCCTCCACGACCACATCGGGGCTGCCACCGCCAGTCTGTCTCCGGACGGGGACACGCTCCTCCACGTGGCGGTCCTG GCAGGCCACCGAGAGATGGTTGAGGGGCTGGTGTCCGACATTCTCCCCGCGGGTGGCATTATTGATCAAGAACAATAGCGGTGCCACTTCGATCAACTAC GCCGCCATTGGCGGGATCACGAGGATTGCAGAGTGCCTCATGAGACGGGTCCCCGGAGCTGCTCCAGGTCCCAAACCAAAAAGGGCACATTCCAGTGGTG GTGGCGTCGCTGTACGGACACAACGAGATGGTTTGTTCATGGGTTCAAGCAAATACGACCTCAAATGGACCCACGTCCAAGCTCAAGAGCTCCTTCGCGG GCTATGCCGGGAGCTCTCCACTTTGCCGGATCCCGAATTCGAGCAAACTGGCATCCAGAAGGCATTGTTTGACGCCATCAGCCATGGGGTTGCAGAGTTC GTCATCGCAATGATCAAGCATTACCTAGATATTGTGTGGAGGGAAGACGATAACCAAAGAGGGATATTCCTCTGTGCCACACTCCAGCGACAGGAGAAAA TATTCAGCATGATTTACAGGATGGGAGCTAAGAAGAACGCCATGGCTACATCTTGGGACATGAGTCACAACAATATTCTGCACCAGGCGGCGTTTCTTGC TCCGCCGTCAAGGCTCGACCGTGTCACGGGCGCCGCTTTTCATATGCAGAGGGAGTTGCAGTGGTACAAAGAAGTGGAGAGCATAGTTCAACCAAAGCAC AGAGAAATGATGAACCTGTTCCAAGACACCCCGAAGACCCTCTTCACCAAAGAGCACAGAGGGCTAGTCGAAGAAGGCGAGAAGTGGATGAAGGAGACCG CCACTTCCTGCACGGTGGTGGCCACCTTGATCGCCATCATCATGTTCTCGGCCCTGTTCACTGTTCCCGGCGGGTTCGACCAGTACACAGGGCTGCCCAT CTTCTTGCACCGAAACTCATTCTCGGTGTTCGTCATATGCGACGCCGTTTCGCTCTTCTCCTCCTCATCTTCCATGCTCATGTTCCTCGGCATCCTCACG TCGCGCTACCGGGAGCAGGATTTTCTCTGGTCATTACCGACGAAGTTGATAATCGGATTGTCGAGGTTGTTCTTCTCGATGGCGACGATGATGATCACGT TCAGAGTGTCACTGGTGATATTCCTAAGGGACAGGTTCTTGTGGGTCACTTTCCGATCATACTTCTGA
AA sequence Show only first row Show all	>Lus10035567 pacid=23147343 polypeptide=Lus10035567 locus=Lus10035567.g ID=Lus10035567.BGIv1.0 annot-version=v1.0 MHGFQLDQPLAGQQSTATPTTSATSGFAEPLMAATGRRQSDSSTTTSGLPPPVCLRTGTRSSTWRSWQATERWLRGWCPTFSPRVALLIKNNSGATSINY AAIGGITRIAECLMRRVPGAAPGPKPKRAHSSGGGVAVRTQRDGLFMGSSKYDLKWTHVQAQELLRGLCRELSTLPDPEFEQTGIQKALFDAISHGVAEF VIAMIKHYLDIVWREDDNQRGIFLCATLQRQEKIFSMIYRMGAKKNAMATSWDMSHNNILHQAAFLAPPSRLDRVTGAAFHMQRELQWYKEVESIVQPKH REMMNLFQDTPKTLFTKEHRGLVEEGEKWMKETATSCTVVATLIAIIMFSALFTVPGGFDQYTGLPIFLHRNSFSVFVICDAVSLFSSSSSMLMFLGILT SRYREQDFLWSLPTKLIIGLSRLFFSMATMMITFRVSLVIFLRDRFLWVTFRSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10035567 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	2.4	0.9514
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	3.9	0.9557
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	4.0	0.9505
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	5.7	0.9537
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	7.1	0.9357
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	9.5	0.9484
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	12.0	0.9189
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	12.0	0.9460
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	12.1	0.9413
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10009520 [exp]	12.4	0.8320

Compare expression of checked genes

Lus10035567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.