Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 500 / 2e-175 Plant protein of unknown function (DUF247) (.1) AT5G22550 280 / 9e-89 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47200 278 / 5e-88 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 273 / 5e-86 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT5G22540 266 / 5e-84 Plant protein of unknown function (DUF247) (.1) AT3G44710 260 / 4e-81 Plant protein of unknown function (DUF247) (.1) AT3G50170 249 / 2e-76 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 243 / 3e-74 Plant protein of unknown function (DUF247) (.1) AT3G50140 242 / 1e-73 Plant protein of unknown function (DUF247) (.1) AT3G47210 235 / 8e-72 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027720 [exp] 877 / 0 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 614 / 0 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 599 / 0 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 254 / 2e-78 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 251 / 3e-78 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 249 / 4e-77 AT4G31980 251 / 5e-76 unknown protein Lus10004516 [exp] 242 / 1e-74 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 240 / 1e-73 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 232 / 9e-71 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116100 [exp] 516 / 0 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 511 / 1e-179 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 418 / 7e-143 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 273 / 2e-85 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 266 / 4e-83 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 229 / 5e-69 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 223 / 1e-67 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.001G333000 [exp] 223 / 2e-67 AT3G50160 237 / 8e-73 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 221 / 6e-67 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 220 / 2e-66 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10035568 pacid=23147639 polypeptide=Lus10035568 locus=Lus10035568.g ID=Lus10035568.BGIv1.0 annot-version=v1.0 ATGTCAAACAACAACCCAACTACCGCCGCCGGCGCCAGCAACGGCGGCGGGGGAGCAGAGTCCATTTCCAACCACCACACGATCAACATACGAACACCAA ACTCCGATCGCATGAAACAGATGCACCAAAAAATCTCCCAACCCCCAAAGCTCCTCACGCCGACAGCCGGGAAAACGTCCTGCTCCATCTTCAGAGCACC GTCCACCTTTGTTGAAATAAATGGCAAGTCGTATCAGCCTTACATCGTCTCCATCGGCCCTTACCACCGCGGCAAGCCTCAGCTCGCCATGATCGAAGAA CACAAGTGGCGCTACTTAGGCTCCTTGCTCAACAGAATCCAATCCTCAATTAGCCTCGAAAGCCTCATCGGTTCCGTCTCCCAGCTCGAATCCGACATCC GAGCGTGCTATTCGGAGGAAATCGAGATTGCCAGTGACGAATTAGCCGAATCCATGGTGGTTGACGGATGCTTCCTGATCGAATTGTTCAGGAAAGTGGC TGGAATCGTTAGATTCGAAGATCACGATCCGATTGTGACCATGTCGTGGATCATTCCGTTCTTCTATCGGGATTTTCTCCGGCTCGAGAACCAAATCCCG TTCTTCGTGCTCGAAACACTTTTTTGTCTGACCGAATTAGACAACGGTCAGACAAAAGGGGGAAATGTGAACATCCAACACATTTTGAGTCCACCCCACA AGAACCGTGGAAGCTCTGACTATCGAAGCAACAACACTAAATTGCCGTCGACGGTCTCTGCATTAGCGATTAATTTCTTCAACAATTCTATGCAGAGACC GGACGAGATCGTCGAGAAATACAAGGACCTAAAGGCGAAACACCTGCTCGATCTGGTACGATCGAGCTACATACAATTCGAAGGGCAATCACCACTAATT CCTCGAGGTGGTGGACCGCCCTCGCACATCATCCACTGCATCTCGAAGCTCCGTCGAGCTGGGATCAAGCTCCGGCCTGTTGAATCGCCCACCCTGCTAC ATGTAAAGTTCCGTAGAGGAGTCCTCGAGATGCCCTCGATCACGATCGACGACTTCATGAGCTCGTTCTTGTACAACGTGGTGGCGTACGAGCAGTGCCA CGCGGGATGCCAGGTGAAGCACTTCACCACGTACGCTACCTTGTTGGACTCGCTGGTTAATACTTTCCGAGACGTGGAGTACCTATGCGACAAGAACATC TTGGAGAACTACTTGGGAACGGATGCTGATGTGGCGAAGTTTCTGAACCACTTGGGGAAGGAGGTGGCGTTTGAGATTGACACGTGTTATTTGGCCACGG TGTTTAATGACGTGCATGAGTATTACAGAAACAACTGGCACATGACGTGGGCGAGCTTTAAGTACACTTATTTTCAGACGCCGTGGTCGTTTATCTCGGC TTTTGCTGCGTTTGTGCTTTTGGGACTCACCATTTTGCAGACGGTTTACACCATTTACGGTTCGTATGCCAATTAA
AA sequence Show only first row Show all	>Lus10035568 pacid=23147639 polypeptide=Lus10035568 locus=Lus10035568.g ID=Lus10035568.BGIv1.0 annot-version=v1.0 MSNNNPTTAAGASNGGGGAESISNHHTINIRTPNSDRMKQMHQKISQPPKLLTPTAGKTSCSIFRAPSTFVEINGKSYQPYIVSIGPYHRGKPQLAMIEE HKWRYLGSLLNRIQSSISLESLIGSVSQLESDIRACYSEEIEIASDELAESMVVDGCFLIELFRKVAGIVRFEDHDPIVTMSWIIPFFYRDFLRLENQIP FFVLETLFCLTELDNGQTKGGNVNIQHILSPPHKNRGSSDYRSNNTKLPSTVSALAINFFNNSMQRPDEIVEKYKDLKAKHLLDLVRSSYIQFEGQSPLI PRGGGPPSHIIHCISKLRRAGIKLRPVESPTLLHVKFRRGVLEMPSITIDDFMSSFLYNVVAYEQCHAGCQVKHFTTYATLLDSLVNTFRDVEYLCDKNI LENYLGTDADVAKFLNHLGKEVAFEIDTCYLATVFNDVHEYYRNNWHMTWASFKYTYFQTPWSFISAFAAFVLLGLTILQTVYTIYGSYAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10019635 [exp]	1.0	0.9564
AT4G37420			Domain of unknown function (DU...		Lus10013221 [exp]	3.9	0.9405
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	11.8	0.9513
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10023607 [exp]	18.8	0.9127
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	21.8	0.9201
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	22.9	0.9021
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	22.9	0.9184
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	23.0	0.9505
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	26.9	0.9420
AT4G02920			unknown protein		Lus10008158 [exp]	27.3	0.9453

Compare expression of checked genes

Lus10035568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.