Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 405 / 1e-138 Plant protein of unknown function (DUF247) (.1) AT5G22540 246 / 9e-77 Plant protein of unknown function (DUF247) (.1) AT5G22550 242 / 1e-74 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G44710 236 / 3e-72 Plant protein of unknown function (DUF247) (.1) AT3G47200 233 / 4e-71 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 232 / 6e-71 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50170 216 / 2e-64 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47210 212 / 3e-63 Plant protein of unknown function (DUF247) (.1) AT3G50140 213 / 6e-63 Plant protein of unknown function (DUF247) (.1) AT3G50150 206 / 8e-61 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027719 [exp] 848 / 0 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 584 / 0 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 569 / 0 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 215 / 2e-64 AT4G31980 251 / 5e-76 unknown protein Lus10020563 [exp] 204 / 1e-62 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10011501 [exp] 207 / 7e-61 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 206 / 7e-61 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 195 / 3e-57 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 195 / 5e-57 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013800 [exp] 439 / 5e-152 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 437 / 5e-151 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 360 / 7e-121 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 219 / 2e-65 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 208 / 3e-61 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 202 / 3e-60 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 194 / 4e-57 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 193 / 2e-56 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 192 / 2e-55 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 187 / 2e-54 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10035569 pacid=23147549 polypeptide=Lus10035569 locus=Lus10035569.g ID=Lus10035569.BGIv1.0 annot-version=v1.0 ATGTCAAACAACCCAGCAGCACCTACCCCCGTCACCGGCGGTGAAACACAATCCAATTCCCACCACCACATAATCAACATGCCGACACCAATTTCCGATC GCCTCAGACGTCTACAGGAAAGGATCTCCCAACCGCCAGAACTCCTCAAACCGACAGCCGGCCACAGCTCCTGCTGCATCTTCAGGGCGCCGTCTACGTT CGTCGACATAAACGGAAAGTCGTATCAGCCTCAAGTCGTCTCCATCGGTCCTTACCACCGCGGCGAGCCTCACTTGGAAATGATAGAAGAGCACAAGTGG CACTACTTGGGCTCCATGCTCAACCGTATCCAACCTCATGCCAGTTTGGGAAGTCTCCTCGATTCAATTTCCGGTCTCGAGGGGGACATCAGGGCTTGCT ATTCGGAGTCCATTCAGATGGGGAGCGATGAATTTGTCGAGTCGATGGTGGTAGACGGCTGTTTCTTACTTGAATTGTTCCGGAAAGTGGCTGGAATCGT TCCATTCGAAGATCACGATCCGATTCTCTCAATGTCTTGGATCATTTCGAATCTTTCTCGAGATTTCCTCCGACTTGAGAATCAGATCCCACTTTTCGTC CTCGACACTCTCTTTCGTTTGACCAACAATCAGACGAAAGAGGCCAATGCAACCATCTCTCACAAATTGAGGGATGTACCATTGTCTACGGTCCCTGCAT TAGCGTTAAATTTCTTTAACCATGTGTCAATGCAGAGACCGGACGAAATCATACAGAGATGCAGAGATCTCAAGGCGAAACACTTACTCGACTTGGTACG ATCGAGCTACACGCTATTCGAAGTCCCCTCTCCGAGGGGGCGGCCCACGCACATCATCCAATGCATATCGAGGCTCCGCATGGCAGGAATCAAGGTCAAG TGGGCCCCCGAGTCGAGCAGCCTACTCGAGGTGAGGTTCGAGAGAGGTGTCCTGGAGATGCCAACGGTGACGATTGACGAGTACATGAGCTCGTTTTTGG TCAACGTCGTGGCATACGAGCAGTGCCACGTGGGATGCCAGGTAAAGCATTTCACAACGTACACGAGCTTGCTGAATTCGCTGGTCAGCAGCTCCAATGA CGTGGAGTATCTCCGCGATACTAACATTCTGGAAAATTATTTGGGGACGGATGATGAGGTGGCGGGGTTTCTGAATAACTTGGGGAAGGAGGTGGCGTTG GATATCAACACGTGTTACTTAGCCACGCTGTTTAACGATGTCCACCAGTATTACATGAACAGCTGGCATGTCCAGTGGTCGGCGTTCAAGTTTACTTATT TCAAGGCTGCATTTGTGCTTTTGGTCCTTACCGTTTTGCAGACCGGGTTCACCATCTACGGTTCTTTCTAA
AA sequence Show only first row Show all	>Lus10035569 pacid=23147549 polypeptide=Lus10035569 locus=Lus10035569.g ID=Lus10035569.BGIv1.0 annot-version=v1.0 MSNNPAAPTPVTGGETQSNSHHHIINMPTPISDRLRRLQERISQPPELLKPTAGHSSCCIFRAPSTFVDINGKSYQPQVVSIGPYHRGEPHLEMIEEHKW HYLGSMLNRIQPHASLGSLLDSISGLEGDIRACYSESIQMGSDEFVESMVVDGCFLLELFRKVAGIVPFEDHDPILSMSWIISNLSRDFLRLENQIPLFV LDTLFRLTNNQTKEANATISHKLRDVPLSTVPALALNFFNHVSMQRPDEIIQRCRDLKAKHLLDLVRSSYTLFEVPSPRGRPTHIIQCISRLRMAGIKVK WAPESSSLLEVRFERGVLEMPTVTIDEYMSSFLVNVVAYEQCHVGCQVKHFTTYTSLLNSLVSSSNDVEYLRDTNILENYLGTDDEVAGFLNNLGKEVAL DINTCYLATLFNDVHQYYMNSWHVQWSAFKFTYFKAAFVLLVLTVLQTGFTIYGSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36430			Plant protein of unknown funct...		Lus10035569 [exp]	0	1
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	2.4	0.7084
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	5.7	0.7323
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	9.5	0.7114
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	12.0	0.6388
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	28.4	0.6670
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	32.9	0.5681
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	33.8	0.6146
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10020685 [exp]	37.7	0.5797
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	40.5	0.6262
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	44.1	0.6308

Compare expression of checked genes

Lus10035569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.