Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03690 602 / 0 Aldolase superfamily protein (.1.2) AT3G52930 593 / 0 Aldolase superfamily protein (.1) AT2G36460 593 / 0 Aldolase superfamily protein (.1.2) AT4G26530 531 / 0 Aldolase superfamily protein (.1.2) AT4G26520 480 / 6e-171 Aldolase superfamily protein (.1) AT2G21330 381 / 4e-131 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G38970 378 / 5e-130 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G01140 376 / 3e-129 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027717 [exp] 699 / 0 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1) Lus10014373 [exp] 644 / 0 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 640 / 0 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10032956 [exp] 531 / 0 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10035473 [exp] 370 / 6e-127 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10031088 [exp] 370 / 1e-126 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10007940 [exp] 264 / 7e-86 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10034619 [exp] 265 / 2e-84 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10005850 [exp] 227 / 4e-74 AT4G26530 261 / 4e-88 Aldolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090100 [exp] 605 / 0 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 593 / 0 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2) Potri.001G468100 [exp] 523 / 0 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 520 / 0 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.009G124100 [exp] 382 / 1e-131 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 380 / 6e-131 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 379 / 1e-130 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.008G125900 [exp] 377 / 1e-129 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.010G117900 [exp] 373 / 4e-128 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10035571 pacid=23147577 polypeptide=Lus10035571 locus=Lus10035571.g ID=Lus10035571.BGIv1.0 annot-version=v1.0 ATGTCTTGCTACAAGGGCAAATACGCCGATGAGCTTGCTGCCAATGCTGCCTACATTGGCACTCCCGGCAAGGGAATTCTCGCAGCTGATGAGTCCACTG GTACCATTGGCAAGCGTTTCGCCAGCATTAACGTTGAGAATGTTGAGGAGAACCGACGTGCTCTTCGTGAGCTCCTCTTCACTGCCCCTGGTGGCCTCCA GTATCTGAGTGGAGTCATCCTCTACGAGGAAACCCTCTACCAGAAGACCAAGTCAGGGAAGCTCTTCGTCGATGTAATGAAGGAAGGCGGTGTCCTCCCC GGCATCAAGGTCGACAAGGGCACAGTTGAGCTAGCCACCACGCCACCCCCAGCCGCCCCCGCACCCCCCGCCCACCCCACACCCACAGGACTCGACGGCC TAGGCCAGCGATGCGCCAAGTACTACGAAGCAGGCGCCCGTTTCGCCAAGTGGCGAGCAGTCCTCAAAATCGGCCCCAACGAGCCATCTCAGCTAGCCAT CAACGAGAACGCCAACGGTCTAGCAAGGTACGCCATCATCTGCCAGGAGAACGGCCTAGTCCCCATCGTCGAGCCAGAAATCCTCGTGGACGGCTCCCAC GATATCAACAAGTGCCTCGACGTCACAGAAAGAGTCCTCGCCGCCTGCTACAAGGCCCTGAACGACCACCACGTGTTCCTGGAAGGCACCCTACTGAAAC CCAACATGGTCACCCCTGGCTCGGATGCCAAGAAGGCTTCCCCTGAAACGATCGCACAGTACACCGTCCTCGCCCTCCAGCGGACGATGCCTGCTGCAGT TCCGGCAGTGGTGTTCCTCTCCGGCGGACAGAGCGAAGAGGAGGCTACCGTCAACCTCAACGCCATGAACATGCTACAGACGAAGAAGCCGTGGAGCTTG TCGTTCTCGTTCGGGCGTGCACTGCAGCAGAGCACCCTGAAGGCGTGGGCTGGTAAGGAGGATAATGTGAAGAAGGCGCAGGAGGTGTTCCTGGTTAGGG CGAAGGCGAACTCGGAGGCGACTATGGGGAAGTATAAGGGTGATGCTACGCTTGCTGAGGGCGCTTCTGAGAGCCTCCATGTTAAGGACTACAAGTACTG A
AA sequence Show only first row Show all	>Lus10035571 pacid=23147577 polypeptide=Lus10035571 locus=Lus10035571.g ID=Lus10035571.BGIv1.0 annot-version=v1.0 MSCYKGKYADELAANAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRALRELLFTAPGGLQYLSGVILYEETLYQKTKSGKLFVDVMKEGGVLP GIKVDKGTVELATTPPPAAPAPPAHPTPTGLDGLGQRCAKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGSH DINKCLDVTERVLAACYKALNDHHVFLEGTLLKPNMVTPGSDAKKASPETIAQYTVLALQRTMPAAVPAVVFLSGGQSEEEATVNLNAMNMLQTKKPWSL SFSFGRALQQSTLKAWAGKEDNVKKAQEVFLVRAKANSEATMGKYKGDATLAEGASESLHVKDYKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	0	1
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	1.0	0.9558
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	2.4	0.9396
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	5.7	0.9082
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	6.3	0.9245
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	6.5	0.9352
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	6.9	0.9297
AT2G03350			Protein of unknown function, D...		Lus10026639 [exp]	7.6	0.8902
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	8.9	0.9014
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	9.9	0.9110
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	11.0	0.9122

Compare expression of checked genes

Lus10035571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.