Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44735 39 / 3e-05 PSK1, ATPSK3 PHYTOSULFOKINE 3 PRECURSOR (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027716 [exp] 105 / 4e-31 AT3G44735 57 / 4e-12 PHYTOSULFOKINE 3 PRECURSOR (.1.2) Lus10020548 [exp] 39 / 5e-05 AT3G44735 55 / 8e-12 PHYTOSULFOKINE 3 PRECURSOR (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148900 [exp] 39 / 4e-05 AT3G44735 65 / 2e-15 PHYTOSULFOKINE 3 PRECURSOR (.1.2) Potri.004G188200 [exp] 39 / 7e-05 AT3G44735 69 / 9e-17 PHYTOSULFOKINE 3 PRECURSOR (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06404 [flax] [poplar] PSK Phytosulfokine precursor protein (PSK)
Representative CDS sequence Show only first row Show all	>Lus10035572 pacid=23147658 polypeptide=Lus10035572 locus=Lus10035572.g ID=Lus10035572.BGIv1.0 annot-version=v1.0 ATGGGAAGAAACCATTACTCTACTCTTCTTCTTCTTGTTTTCCTGCTGGTTTCTTCGCAAGGTACTGTTGGGAGGAGGATCTCTGTAGATGATCAGAAGG CTGGAGCAGAGCTTGCTTTTGGTTCTTCAGCTTCTCTTGATGAAGATTTCTCCATGGTAACGGGAGAAGGAGGAGTTGTCTGTGAAGACAAGGATGGAGA AGAAGAAGAAGACTGCTTGAAGAGAAGGATGGTGGCTGAAGCTCACTTGGACTACATCTACACTCAGAGCCATAATCACCCTTGA
AA sequence Show only first row Show all	>Lus10035572 pacid=23147658 polypeptide=Lus10035572 locus=Lus10035572.g ID=Lus10035572.BGIv1.0 annot-version=v1.0 MGRNHYSTLLLLVFLLVSSQGTVGRRISVDDQKAGAELAFGSSASLDEDFSMVTGEGGVVCEDKDGEEEEDCLKRRMVAEAHLDYIYTQSHNHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	0	1
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	1.0	0.9433
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	3.2	0.9396
AT5G08350			GRAM domain-containing protein...		Lus10017372 [exp]	3.2	0.9004
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	3.5	0.9357
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10026722 [exp]	3.7	0.8945
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	6.0	0.9080
AT3G45790			Protein kinase superfamily pro...		Lus10013791 [exp]	6.2	0.8961
AT2G43990			unknown protein		Lus10008165 [exp]	7.3	0.8820
AT1G60783			unknown protein		Lus10004622 [exp]	7.9	0.9064
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	8.7	0.9186

Compare expression of checked genes

Lus10035572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.