Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36480 340 / 7e-102 ENTH/VHS family protein (.1.2.3) AT4G04885 178 / 5e-46 PCFS4 PCF11P-similar protein 4 (.1) AT2G36485 94 / 4e-22 ENTH/VHS family protein (.1) AT1G66500 88 / 6e-18 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT5G43620 85 / 4e-17 Pre-mRNA cleavage complex II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027715 [exp] 1822 / 0 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3) Lus10014370 [exp] 627 / 0 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10023867 [exp] 559 / 0 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10018357 [exp] 179 / 9e-46 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10007652 [exp] 177 / 4e-45 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10006766 [exp] 174 / 3e-44 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 166 / 7e-42 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115600 [exp] 605 / 0 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.004G020300 [exp] 184 / 4e-47 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 172 / 1e-43 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.017G017800 [exp] 87 / 3e-17 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.007G134000 [exp] 52 / 2e-06 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10035573 pacid=23147589 polypeptide=Lus10035573 locus=Lus10035573.g ID=Lus10035573.BGIv1.0 annot-version=v1.0 ATGGAGAGTGTTCGCAACTCGCTCCAGAGATCAAGAGAATCGGCACTGAAGAGACCTCGATTAGAGGACCAATCAAACCCTAGCGGTGGTGGCCGGCCTT TCGGCCAGCGGCCGACGCCGACAAGGTTGGTTAGGGCTTCCGGCGATGATGGTAACGACTTGGGTGCGTACCACCCTCAGCCATTGCAGCAGAGTCAGGA GCTGGTAAATCAGTACAAGACTGCCCTTGCGGAGCTGACGTTCAACTCCAAGCCGATCATCACTAACCTGACTATAATCGCTGGGGAGAATGTCCTTCAC GCGAGAGACATTGCCGTTGTTATCTGCAAACACATTATTGAGGTTCCAAGTGAGCAGAAGCTGCCAGCACTTTATCTGCTTGACAGCATTGTGAAGAATC TTGGGATTCCGTATGCAAAACATTTTGGTCAAAGATTGACAGAGGTGTTCTGCAAGGCATATAGGCAGGTTGATCCTTCAATTCAATCCAGCATGCGCCA TCTTTTTGGAACGTGGAGAAGTGTCTTCCCTCTGCAGTTACGTCAGATGATTGAAAAGGAACTCGGATTTTCTTCTGCAGCTAATGGATCATCTGCTGGA ACAATCACTTCAAAGCCGGATGCACAGTCACAGCTACCACAACATAGCATTCATGTCAATCCAAAGTACTTGGAAAGGCAGCAGCGTCTTCAACAGTCAA TCGGGGCACCAAGAGCTGACTCACCTGATGAAACCGAAAGGCCAGAAAGATCTGCTAGCATTGTAGCTTCGCGCCCTTGGACAGTTTCAGCTGTTAAAGT GCGTAACATCCAACGTACTCGGAGGGCACCGCTAAGTGATTCCAGTGAAGAGAAGAGCAGAGGTGTATTATATGGGGATTTGGACTATGATACCAATGCT TCGAGGAACTTGGGCTTGGGATCTGGGCGCATAGAAGCCCGGGGTTCTGAACAGGGACATGGGAAATCATGGTATGGAGTGGCAGGTAGTGTTCCTGAAA AGTTGTCTGACCCACGAAATGGGTACGGCATGAAGCATAGAGTGCCAGATCATCTGATTTCCAAATCAGGTAAAGCTACACATTTACAGAAAACCGAGGG CATTGCCCACAGAAGGGGTAACAACATTTCTACCAGTTGGAAAAACTCTGAGGAAGAGGAGTTCACGTGGGATATGCACTCCAGATTTCCTGATAGAGAC ACGGAGGAATTGAGGATTGAAAATCATGTAAGAAGGGCTCAAATTGCAGAGGAAGTTCTGTCTCAGTTTGATAGAGAGTCTTCCTCAGATTCATTATCCT CTGAGCATGGCGATCTTGCGAATAGAGGGAACCATTCATCCTCACCATGGAGGTGGCAAGAAGCAACCTCAATGGATGATCTAGTGTTTCCTGATTCTGG CACTAATTCTAGTTATACAGAAGGGAAACCAGCTATGCATGGCGGTTTGCCTTCTAGGGTCCCAACAGGTGCTCAAGCAGCGCCGCCTCATGCTGCTGCC TCCGGCTTTGGGGTTACGGAAAATGCATCGTTAAACCTCACCAGAACCAGAGCACACCCTTCACAGCAATCACCACCATGTGAAACCTTGCCAAGTGCCT CATTTCCGTTGTGCTATCCTCCCAGCCAATTGCCAATTTCAGCTGGACAGGAATACCAATCGGTCTTGCCTCAATCCCGATCAAAGGTTCATCAATCTTC AAGAAGTTTGCTTCCTCCAAATACTCAGTTGCGAGATTTGAACAAATTACCACCTGCAGAACTGCGATCTTCTTCCCTAGTAGGGGTTTCTAGACAACAA GCTCAACGCTATCCTTTCTCTCATGAACAGCAGTTGGACTATGAACCATCTGAGTCTTCTGATCCATCTCAGAAGAAAATCCTGTCCTTAAAACATAATG TTGGAGCTTCATTTCCATCCGGGCTTTCTGATTCGGACCAGTGCATTCGACATACAACAGAAGCTTCAGGCCATTCAAGCACAAGTAGTTTATTAGCAGC CGTTATGAAGAGTGGCGTTCTATCAGCTGTAACTGCTGGTGGATTGGCTAGTAAGAGTTTCCAGAATAGTGGACATGTTAAATCGAAGGCAGATGCTAAA CCTCCTCTTTTGAACGGGCCTTGTCCTATCCAACTATCTTCTTCTGGCTCCAGAAAAGCGACTGCTTCTAAAACGGGACGCCCCACTTTGCATGATGTAA ACTCATCTGCCTCAGTTGTCTCCTGTAAGAAGGAAGAAGAGCAGCAGTTATCACCAGCTCCTACATCTCCATCAAAACGAACTCCAAAGTTGATAGATAA GGTATCAAACCCGATTTCAAATCTTTTAAGCTCATTACTCGTGAAAGGTTTGATAAAGTCAGAGGTCTCGCCAGTATCATCATCTGAGATGACCATTCAA CGAGACACTCGGGACAAAAGTACTGTAGTTTCCAAGTCTGCACCAGATTCTTCTCTGCCAGAACCTGCTTCCACAACAGATGAGGAATCTCTTGAAAAAA CTGATGCAAGCAGCTCTATTGATTTGTCCAAGTCTACCCTATTGAAGCCCGATGCCAAAGATTCCTCTATTTTGCCTCTGCCTATCCCAGTTGAAATTGA AAGTCTGATTGGATTGCAGTTTAAGTCGAATGTTATCCGAGCATTTCATCCTACAGTCATCGACTCACTTTTTGACGATCTTCCTCACCAGTGTAATGTA TGTGGTCTCCGGCTTAAACTTAAAGAGGGGCTTGATAAGCATTTGGAGTGGCACAGTGAAACTGAGACTGGTTCTGATGGGTTAAGAATAGGCATAAGAA GATGGTATGCACAAAAAGAGGATTGGATTTCCCCAAAGCCTTGTGTATTGGATTCGTCCGAGATGGACGGCTCTCAGAGTATAACAGACTGGGATGGCCC AATGGCTCCTGCAGATGAAGATCAATCCATATGTGTTCTATGTGGTGAGCTGTTTGAAGATTATTACAGTCCTGAAGGAAATAGGTGGATGTTTTGGGGA GCCATGCACATGGCACTTCCATTGGATAATGATCCACAACGAGATGTACTTAAGTCTCAGAATGATCTCCTAGTGCATTTGCGTTGTCCCTCAGAAGGTT CAGCTGATGATCTGGGTCTGGTAAAGCTTGTGAAAATGGGTCGTGGCTGCTTTCTTGAACACCGCAAGGCTGATTGGGTTACGAAAGAGGCGATTGCAGG ACGTCTCTAA
AA sequence Show only first row Show all	>Lus10035573 pacid=23147589 polypeptide=Lus10035573 locus=Lus10035573.g ID=Lus10035573.BGIv1.0 annot-version=v1.0 MESVRNSLQRSRESALKRPRLEDQSNPSGGGRPFGQRPTPTRLVRASGDDGNDLGAYHPQPLQQSQELVNQYKTALAELTFNSKPIITNLTIIAGENVLH ARDIAVVICKHIIEVPSEQKLPALYLLDSIVKNLGIPYAKHFGQRLTEVFCKAYRQVDPSIQSSMRHLFGTWRSVFPLQLRQMIEKELGFSSAANGSSAG TITSKPDAQSQLPQHSIHVNPKYLERQQRLQQSIGAPRADSPDETERPERSASIVASRPWTVSAVKVRNIQRTRRAPLSDSSEEKSRGVLYGDLDYDTNA SRNLGLGSGRIEARGSEQGHGKSWYGVAGSVPEKLSDPRNGYGMKHRVPDHLISKSGKATHLQKTEGIAHRRGNNISTSWKNSEEEEFTWDMHSRFPDRD TEELRIENHVRRAQIAEEVLSQFDRESSSDSLSSEHGDLANRGNHSSSPWRWQEATSMDDLVFPDSGTNSSYTEGKPAMHGGLPSRVPTGAQAAPPHAAA SGFGVTENASLNLTRTRAHPSQQSPPCETLPSASFPLCYPPSQLPISAGQEYQSVLPQSRSKVHQSSRSLLPPNTQLRDLNKLPPAELRSSSLVGVSRQQ AQRYPFSHEQQLDYEPSESSDPSQKKILSLKHNVGASFPSGLSDSDQCIRHTTEASGHSSTSSLLAAVMKSGVLSAVTAGGLASKSFQNSGHVKSKADAK PPLLNGPCPIQLSSSGSRKATASKTGRPTLHDVNSSASVVSCKKEEEQQLSPAPTSPSKRTPKLIDKVSNPISNLLSSLLVKGLIKSEVSPVSSSEMTIQ RDTRDKSTVVSKSAPDSSLPEPASTTDEESLEKTDASSSIDLSKSTLLKPDAKDSSILPLPIPVEIESLIGLQFKSNVIRAFHPTVIDSLFDDLPHQCNV CGLRLKLKEGLDKHLEWHSETETGSDGLRIGIRRWYAQKEDWISPKPCVLDSSEMDGSQSITDWDGPMAPADEDQSICVLCGELFEDYYSPEGNRWMFWG AMHMALPLDNDPQRDVLKSQNDLLVHLRCPSEGSADDLGLVKLVKMGRGCFLEHRKADWVTKEAIAGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10035573 [exp]	0	1
AT3G04490			unknown protein		Lus10042566 [exp]	3.2	0.8542
AT3G04490			unknown protein		Lus10022024 [exp]	3.2	0.8754
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	13.4	0.7551
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10021929 [exp]	14.0	0.7475
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	14.8	0.8227
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	16.8	0.8261
					Lus10000409 [exp]	18.0	0.8210
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	23.2	0.7910
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	23.5	0.7930
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10024419 [exp]	28.6	0.7731

Compare expression of checked genes

Lus10035573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.