Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04865 61 / 2e-11 Aminotransferase-like, plant mobile domain family protein (.1) AT1G17930 57 / 3e-10 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 56 / 6e-10 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 40 / 0.0002 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043081 [exp] 97 / 4e-26 AT1G17930 64 / 2e-12 Aminotransferase-like, plant mobile domain family protein (.1) Lus10000686 [exp] 90 / 3e-23 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 93 / 9e-23 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 89 / 3e-21 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10003026 [exp] 86 / 5e-21 AT2G25010 45 / 4e-05 Aminotransferase-like, plant mobile domain family protein (.1) Lus10021566 [exp] 84 / 3e-20 AT1G17930 54 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10000980 [exp] 81 / 4e-20 AT1G17930 56 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012087 [exp] 83 / 6e-20 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10000720 [exp] 77 / 9e-19 AT1G17930 56 / 1e-09 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10035574 pacid=23147438 polypeptide=Lus10035574 locus=Lus10035574.g ID=Lus10035574.BGIv1.0 annot-version=v1.0 ATGTATAGGTGCCTCGGGGAGGCTAGTCAAGCTCAGTCTTCGGGACTTTGTGGGTGCTTGACATTGTTGCAGTCATGGATCTATGAGTATTTTCCAACTT TTCGTCCTTCCCATGATCCGACTAGTCAAAGTCCTAATAACCCGCTTGCTGGGAGGTGGGATGGCCCTGATAGATCTGATGGGACGGGAGAGAGTTTTCA GCATAGGTTGGATTTGTACCGTCGTCACCTAGATGGGATGACGGCCCGTTCTGTGGACTGGCTTCCTTTTGGTAGTGCGCCGGCTAGAGATGACCCGAGT AGGGGGTTGCACACGGCTAAGTCTTTGTACTGTGGAGTTATACAGATTGTGACAGGACTGAGTCGTACAATCCCTCACACGCGTTCTTCGGCAGTATGGG TACCAACAGGTATTGCCTGA
AA sequence Show only first row Show all	>Lus10035574 pacid=23147438 polypeptide=Lus10035574 locus=Lus10035574.g ID=Lus10035574.BGIv1.0 annot-version=v1.0 MYRCLGEASQAQSSGLCGCLTLLQSWIYEYFPTFRPSHDPTSQSPNNPLAGRWDGPDRSDGTGESFQHRLDLYRRHLDGMTARSVDWLPFGSAPARDDPS RGLHTAKSLYCGVIQIVTGLSRTIPHTRSSAVWVPTGIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04865			Aminotransferase-like, plant m...		Lus10035574 [exp]	0	1
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	1.0	0.8894
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10019890 [exp]	4.5	0.8063
					Lus10028567 [exp]	12.1	0.7787
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	14.1	0.7728
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	16.9	0.7565
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	17.8	0.7429
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	20.2	0.7291
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	21.6	0.7330
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	22.6	0.7373
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	23.2	0.7307

Compare expression of checked genes

Lus10035574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.