Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23620 429 / 5e-152 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027714 [exp] 587 / 0 AT3G23620 455 / 2e-162 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088700 [exp] 480 / 2e-172 AT3G23620 396 / 3e-139 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10035575 pacid=23147356 polypeptide=Lus10035575 locus=Lus10035575.g ID=Lus10035575.BGIv1.0 annot-version=v1.0 ATGTCGATGAGGATAAAGACTCCACAGAAAGGAAGAATCAGGCGGGCGCTTGAGAAGCGAGCTCCAAAGCTCGTGGAGACGGGGAAGAAGACGCTGATAC TCCAAGGCACGAAGACTAGCAACGTGTTGAATTCTGTTCTGACCGAGCTGTATCATTTGAAGAAGGATAGTGCGATAAGGTATACGCGGAAGAATGATAA CATCAGGCCGTTTGAGAGTGGGGGCGAGACTTCCCTCGAGTTCTTTTCGGAGAAAACTGATTGCAGCATTTTTGTGTATGGCAACACATCAAAGAAGCGG CCTGACAATCTTGTCATTGGACGTACCTATGATCACCATATCTATGATCTCATGGAGGTCGGTGTGGAGAATTTTAAATCCATGTCATCGTTCAAGTACG ATAAACAGCTAGCTCCAAGGAGCGGGACGAAACCATTCATCACTTTCGCGGGTGAAGGTTTCGAGACCGTAGATGAGCTGAAACAACTGAAAGAAGTTCT GCTCGAGCTTTTCCGTGGAGAGGTAGTGGAAAATTTGAGCCTTGCTGGACTAGACAGAGCTTACGTATGCACAGCAGTGTCATCAGTGCGAGTTTGCCTT ACTCATTGTGCGGTGAGGTTGAAGAAGTCTGGTTCCGTAGTCCCGAGGATCGAACTTGTGGAAATCGGCCCTTGTATGGATTTGGTGTCCCGTCGCCATC GCCTTCCTAACGAAAGCCTAGTGAAAGAAGCCACGAGAATCTCTAAAGAGACTATCAAGAAGAAGATTAAGAACGTCGTTGGAGATGCTATAGACGGCAA GGTTGGAAAGATTTACATGCCTGATCAGAAGGTCGGAGAGATGCAACTGCCAAACAAAGCCAAGGGAGTAAAGAGAGAGCGGAAACAAGCCAAGTTGAAG AAGAGCGGTGAGCCTGCATCGAAGAAGCAAAAGGAAGCGTCGGACTAA
AA sequence Show only first row Show all	>Lus10035575 pacid=23147356 polypeptide=Lus10035575 locus=Lus10035575.g ID=Lus10035575.BGIv1.0 annot-version=v1.0 MSMRIKTPQKGRIRRALEKRAPKLVETGKKTLILQGTKTSNVLNSVLTELYHLKKDSAIRYTRKNDNIRPFESGGETSLEFFSEKTDCSIFVYGNTSKKR PDNLVIGRTYDHHIYDLMEVGVENFKSMSSFKYDKQLAPRSGTKPFITFAGEGFETVDELKQLKEVLLELFRGEVVENLSLAGLDRAYVCTAVSSVRVCL THCAVRLKKSGSVVPRIELVEIGPCMDLVSRRHRLPNESLVKEATRISKETIKKKIKNVVGDAIDGKVGKIYMPDQKVGEMQLPNKAKGVKRERKQAKLK KSGEPASKKQKEASD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	0	1
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	1.4	0.9081
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	2.2	0.9089
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	4.2	0.9029
AT1G26880			Ribosomal protein L34e superfa...		Lus10008617 [exp]	4.6	0.8836
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	4.9	0.8803
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	5.5	0.8878
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	5.6	0.8462
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	6.6	0.8999
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	7.2	0.8503
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023427 [exp]	8.7	0.8879

Compare expression of checked genes

Lus10035575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.