Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12100 363 / 6e-119 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 203 / 1e-59 RPF2 rna processing factor 2 (.1) AT1G05670 205 / 2e-59 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 198 / 6e-57 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 191 / 2e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09680 190 / 7e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 190 / 1e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 187 / 4e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 187 / 5e-53 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 186 / 1e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008650 [exp] 663 / 0 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023863 [exp] 523 / 0 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027914 [exp] 210 / 3e-61 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 208 / 1e-60 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 206 / 2e-60 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012068 [exp] 209 / 4e-60 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 197 / 9e-57 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035735 [exp] 187 / 6e-54 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019524 [exp] 187 / 8e-53 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249800 [exp] 473 / 2e-161 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G035700 [exp] 215 / 2e-63 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.017G131400 [exp] 209 / 7e-62 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 202 / 2e-59 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 202 / 5e-59 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 200 / 1e-58 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 199 / 2e-57 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 197 / 2e-57 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 196 / 3e-57 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 197 / 5e-57 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035577 pacid=23147580 polypeptide=Lus10035577 locus=Lus10035577.g ID=Lus10035577.BGIv1.0 annot-version=v1.0 ATGAAGGGAAGCGGCGTCCGTCCTAACGTGTGTGTTTACAATGTCTTGTTAGGTGGGCTGTTTAAAGAGAGGAGGATCAAGGATGCAGAGAAAGTGTTCG GCGAAATGCGTGAAAGAAATGTAGCTGCTAACAAGGTAACTTTCAATACTTTGATTGATGGATATTGTAAAGTGGGTGACGTTGAAGCAGCGTTCAGGTT GAGAAATAGGATGAAGGAGGAGAAAGTTGAGCCTAGTGTTGTAACGTTCAACACATTGCTTAGTGCTCTGTGTAAGGCTAAGAGGATGGGAGATGCAGGA ATGTTGGTAAAGGAGATGGAAGCCCATGGCTTTACCCCCGATAGGTTTACTTACTCGATACTTTTCGATGGGTATTCAAAGAGTAACGATGGTGTAGAAG GTGCATTGGAGCTGTACAAGGCGGCTGTTTCTAGAAGAATTCGGATTGATAGCTATACCAGTAGCATTCCGCTGAATGGGTTGTGCAAACAAGGTCAAGT TTGGAAGGCTGAAGAGGCTTTGAAGATGTTTTTGGAGAATGGGTTGGTTGCTGATGAGGTTGTGTACAACACTATTGTGAATGGGTGCTGTTTAGTCGGT GAGATGAACAGAGCGATCCAGACCATTGAGGATATGGAGAGTAAAGGGCTGAGATCGAATAGTATAACTTTCAACAGTTTGATTCATAGGTTTTGTGGGA TGCAAAAGATGGATGAGGCTGAGAAATGGATAATGAACATGGTGAAGAAGGGAGTTTCTCCAACTGTGGAAACATACAACACTCTCATTGATGGCCACGG ACAAGCATCTATCTTTGACCGTTGCTTTGAACTTCTTGAAGAAATGGAAGAGAAGGGGGTAAAGCTGAATGTGGTAACATATGGGTCGTTATGCAAGCAA GAGAAGATGCTTGAAGCAGAGATAGTCCTCAGAGATATGTCAGGGAAGGAGTTTTCAGCTAACGCTCAGATATACAACATGCTTATTGATGGCAGCTGTA TATCAGGGAAGTCGAAAGATGCTTTCAGATTCTTCGACGAGATGTCGAGAAATGAAATCCCCGCTATGCTTGTCACCTACAACGCACTGACGGTCTTTGT AAAAAGGGGAAGCTAA
AA sequence Show only first row Show all	>Lus10035577 pacid=23147580 polypeptide=Lus10035577 locus=Lus10035577.g ID=Lus10035577.BGIv1.0 annot-version=v1.0 MKGSGVRPNVCVYNVLLGGLFKERRIKDAEKVFGEMRERNVAANKVTFNTLIDGYCKVGDVEAAFRLRNRMKEEKVEPSVVTFNTLLSALCKAKRMGDAG MLVKEMEAHGFTPDRFTYSILFDGYSKSNDGVEGALELYKAAVSRRIRIDSYTSSIPLNGLCKQGQVWKAEEALKMFLENGLVADEVVYNTIVNGCCLVG EMNRAIQTIEDMESKGLRSNSITFNSLIHRFCGMQKMDEAEKWIMNMVKKGVSPTVETYNTLIDGHGQASIFDRCFELLEEMEEKGVKLNVVTYGSLCKQ EKMLEAEIVLRDMSGKEFSANAQIYNMLIDGSCISGKSKDAFRFFDEMSRNEIPAMLVTYNALTVFVKRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10035577 [exp]	0	1
AT3G26922			F-box/RNI-like superfamily pro...		Lus10016192 [exp]	7.1	0.6337
AT3G49030			FBD, F-box and Leucine Rich Re...		Lus10029424 [exp]	53.5	0.5040
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	59.1	0.5411
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10025375 [exp]	67.1	0.5102
AT5G07670			RNI-like superfamily protein (...		Lus10031165 [exp]	68.3	0.5334
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	76.7	0.5201
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	79.4	0.5289
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040100 [exp]	84.7	0.5357
AT2G29620			unknown protein		Lus10001202 [exp]	85.5	0.4627
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10022243 [exp]	98.9	0.4590

Compare expression of checked genes

Lus10035577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.