Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44310 182 / 3e-60 Calcium-binding EF-hand family protein (.1) AT4G38810 52 / 3e-08 Calcium-binding EF-hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008649 [exp] 279 / 3e-98 AT2G44310 177 / 2e-58 Calcium-binding EF-hand family protein (.1) Lus10009192 [exp] 90 / 9e-24 AT2G44310 94 / 1e-25 Calcium-binding EF-hand family protein (.1) Lus10026291 [exp] 46 / 3e-06 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10007567 [exp] 44 / 2e-05 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G231100 [exp] 203 / 2e-68 AT2G44310 221 / 2e-75 Calcium-binding EF-hand family protein (.1) Potri.014G161200 [exp] 142 / 3e-44 AT2G44310 143 / 1e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 135 / 9e-42 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 131 / 5e-40 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 131 / 5e-40 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218300 [exp] 131 / 5e-40 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.002G219000 [exp] 131 / 6e-40 AT2G44310 137 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218800 [exp] 131 / 6e-40 AT2G44310 137 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218201 [exp] 129 / 2e-39 AT2G44310 136 / 4e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218725 [exp] 129 / 4e-39 AT2G44310 135 / 1e-41 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035578 pacid=23147505 polypeptide=Lus10035578 locus=Lus10035578.g ID=Lus10035578.BGIv1.0 annot-version=v1.0 ATGGGAGTGGTCGTAATCGACGGAACGACGGTGAAGGATTTCACGGAGAACGAGGCGCATTTCAACAAGAGCGTCGAAGAGACCTTCGCCTTACTGGATG TCAACAACGACGGCGTACTGTCCCGGTCGGAGCTCCGGCGCGGATTCGAGACCCTCCGCCTTATGGACAATGACTTCGGCTTCGACACACCGACGCGCCC CGACGAGCTGTCCAAGCTGTACGACTCCATCTTCGACAAGTTCGACGACGACCACAACGGGACTGTGGATCTGGAAGAGTACCGTTCGGAGGTGAAGAAG ATCCTGCTGGCGATCGCCGAGGGATTGGGCTCCAACCCGATCCAGATGGCGTTGGAGGAGAATGACGACCACAGCTTCCTGAGGAAAGCCGCCCAGCTCG AGGCCTCTAAAGTTGCTAACGCCTCCGCAGGTCCCTAA
AA sequence Show only first row Show all	>Lus10035578 pacid=23147505 polypeptide=Lus10035578 locus=Lus10035578.g ID=Lus10035578.BGIv1.0 annot-version=v1.0 MGVVVIDGTTVKDFTENEAHFNKSVEETFALLDVNNDGVLSRSELRRGFETLRLMDNDFGFDTPTRPDELSKLYDSIFDKFDDDHNGTVDLEEYRSEVKK ILLAIAEGLGSNPIQMALEENDDHSFLRKAAQLEASKVANASAGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44310			Calcium-binding EF-hand family...		Lus10035578 [exp]	0	1
AT2G44310			Calcium-binding EF-hand family...		Lus10008649 [exp]	4.0	0.8883
AT1G22850			SNARE associated Golgi protein...		Lus10041062 [exp]	5.9	0.8910
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	12.8	0.8595
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	17.4	0.8846
AT3G12345			unknown protein		Lus10040344 [exp]	20.8	0.8681
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	21.1	0.8641
AT5G38060			unknown protein		Lus10004070 [exp]	22.0	0.8366
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	22.8	0.8647
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	25.7	0.8621
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	28.8	0.8482

Compare expression of checked genes

Lus10035578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.