Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10040 212 / 2e-63 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G76870 168 / 3e-47 Trihelix unknown protein AT1G21200 166 / 5e-46 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G33240 42 / 0.0006 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008643 [exp] 667 / 0 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1) Lus10029777 [exp] 176 / 8e-50 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10042805 [exp] 171 / 5e-48 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10028581 [exp] 164 / 5e-46 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10018886 [exp] 164 / 5e-46 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096300 [exp] 401 / 5e-136 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 400 / 3e-135 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 174 / 7e-49 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.002G068700 [exp] 174 / 8e-49 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 167 / 3e-46 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 166 / 9e-46 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035582 pacid=23147451 polypeptide=Lus10035582 locus=Lus10035582.g ID=Lus10035582.BGIv1.0 annot-version=v1.0 ATGGAACAGAATGGGTTGTTTTCAGGAGGCGGGATAACATCGTCTTCAGCAGCAATGCTAGGTCTAGATATTCCACTTCACCAGCAACAAATCCCTCAAA ATAACCCTCCCCTACAGCAGCAGCAGCACAATTTCCACCACCACAATCCTCCAATGGCGGCTCCTGCTGCTGCAGCAGCAGCATATGCTCCTCCCCAGCT TCAACCTGCTGTTAAAGTACAGAATCAATACCCACCATTTGCATCTTCTTCACACCCCAAATCACCACTGAGTGATGACGATGACTGCGTTGGAGATGAT GGTGGCGATCCCAAGAAAAAGATGTCTCCATGGCAGAGAATGAAGTGGACTGACGGCATGGTGCGGCTTCTAATCATGGCTGTTTACTACATCGGTGACG AAGTTGGGACCGAGGCGAGTGATCCTGTTGTGTCGAATTCGGGTTCTGGGAAGAAGAAGCAATCAGGTGCAGGGCTGTCACAAAAGAAAGGAAAGTGGAA GTCTGTATCAAGGGCTATGCTCGAGAAAGGGTACTATGTGTCTCCACAACAGTGTGAGGACAAATTCAATGACTTGAACAAGAGGTACAAGAGGGTCAAC GATATTCTCGGAAGGGGAACTGCCTGCAAAGTTGTGGAGAATCAGGCTTTACTTGATACTATGGATCTTTCCCCGAAGATGAAAGAAGAAGTGAGGAAAC TGTTGAGCTCTAAGCACTTGTTCTTCAGGGAAATGTGTGCTTATCACAATAGCTGCGGCCACGGACCGACATCTGGTGATGCTACTCATCAGCAGCATCA GCATCATCCTCAGCAGGGTTCTTCTCAAGTGCTTCAACAACAGAAGTGTTCTCATTCTGAGAACAGTGGCCACATGGTTGCGAATTCGATGGCCGGGAAG AGGGTAACCAACGACGAAGATGACGATGATGATGAGGATGAAAGCCATGATGACGAGTATGATGATGATGAAGACTACGAGGATGGAGCAGAAGGGCATT CAAGAGGTCAGAACAGCAATGCGAGCCATGGACACGAAGAAGACGGCCACGATACACACAAAAGGCCGAGAAGAACAGCAACGGACATGATGATGTCATC AACAATGCAGGAATTCGACGGGGAATTGATGGGTGTAGTGCAGGACGGGGCGAAGAGTCCATGGGAGAAGAAGCAGTGGATGAGGATGAGGTTGATACAG CTTGAAGAGCAGCAAGTGAGCTACCAGGCCAAGTCGTTGGAGATCGAGAAGCAAAGGATGAAGTGGGTGAAGTTTGCTGGTAAGAAGGAGAGGGAGATGG AACGAGCGAAGCTGGAAAACGAGAGGAAGAGGATCGAGAATGAGAGGATGATGCTCTTTGTGAGGCAGAAGGAGCTTGATCTGCAACATCAACAGCAGCA GCAGCAGCAGCAGCTTTGTTCTAACAGGAGAAGTGATCCGTCTTCTCTTACTGGATGA
AA sequence Show only first row Show all	>Lus10035582 pacid=23147451 polypeptide=Lus10035582 locus=Lus10035582.g ID=Lus10035582.BGIv1.0 annot-version=v1.0 MEQNGLFSGGGITSSSAAMLGLDIPLHQQQIPQNNPPLQQQQHNFHHHNPPMAAPAAAAAAYAPPQLQPAVKVQNQYPPFASSSHPKSPLSDDDDCVGDD GGDPKKKMSPWQRMKWTDGMVRLLIMAVYYIGDEVGTEASDPVVSNSGSGKKKQSGAGLSQKKGKWKSVSRAMLEKGYYVSPQQCEDKFNDLNKRYKRVN DILGRGTACKVVENQALLDTMDLSPKMKEEVRKLLSSKHLFFREMCAYHNSCGHGPTSGDATHQQHQHHPQQGSSQVLQQQKCSHSENSGHMVANSMAGK RVTNDEDDDDDEDESHDDEYDDDEDYEDGAEGHSRGQNSNASHGHEEDGHDTHKRPRRTATDMMMSSTMQEFDGELMGVVQDGAKSPWEKKQWMRMRLIQ LEEQQVSYQAKSLEIEKQRMKWVKFAGKKEREMERAKLENERKRIENERMMLFVRQKELDLQHQQQQQQQQLCSNRRSDPSSLTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	0	1
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	1.0	0.9511
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	1.4	0.9277
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	2.2	0.9152
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028470 [exp]	2.4	0.9261
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	3.2	0.8847
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	3.5	0.9188
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	4.2	0.9038
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	4.9	0.8729
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	5.3	0.8585
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	6.2	0.8701

Compare expression of checked genes

Lus10035582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.