Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03790 145 / 6e-43 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT2G36610 127 / 8e-37 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1) AT1G69780 108 / 4e-28 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G22430 106 / 2e-27 HD ATHB6 homeobox protein 6 (.1) AT4G40060 105 / 2e-27 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 103 / 1e-26 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT3G01470 102 / 3e-26 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G15150 101 / 2e-25 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT4G36740 96 / 5e-24 HD HB-5, ATHB40 homeobox protein 40 (.1) AT3G01220 97 / 8e-24 HD ATHB20 homeobox protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008641 [exp] 290 / 1e-99 AT5G03790 152 / 4e-45 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10013277 [exp] 105 / 3e-27 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10012845 [exp] 104 / 5e-27 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 104 / 6e-27 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10024031 [exp] 102 / 1e-26 AT4G36740 189 / 2e-60 homeobox protein 40 (.1) Lus10042180 [exp] 103 / 3e-26 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 102 / 6e-26 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10022225 [exp] 102 / 7e-26 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 101 / 7e-26 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117700 [exp] 194 / 2e-62 AT5G03790 181 / 5e-57 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Potri.005G071900 [exp] 110 / 1e-28 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 108 / 4e-28 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.010G093400 [exp] 106 / 2e-27 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.015G065400 [exp] 106 / 2e-27 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G148200 [exp] 105 / 2e-27 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.008G194400 [exp] 103 / 2e-26 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.002G100600 [exp] 102 / 3e-26 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.012G070900 [exp] 100 / 4e-25 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.005G161500 [exp] 99 / 7e-25 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10035583 pacid=23147527 polypeptide=Lus10035583 locus=Lus10035583.g ID=Lus10035583.BGIv1.0 annot-version=v1.0 ATGGATATGAAGCAGCTAGCGGAAGCAGCGGCGTATCATCACCAGCAGCAACAAGGCATGACCATGAGTCCAGCAACTTCGTCGGAGAAGACGATGAGCT ATGGAAGCAGCAGCTGCGGTAGCTACGCGGCAAACCAGCAGCATCAGATGATGATGATGATGATGGATCAGAAGAAGAAGAGGCTGACGAACCATCAGCT CGAATCTCTTGAAACAAACTTCCAGGAGGAGATCAAGCTTGATCCCGACAGGAAAATGAAACTGTCCCGCGAACTCGGTCTCCATCCGAGGCAGATTGCC GTGTGGTTCCAGAACCGTAGAGCTCGCTGGAAGGCCAAGCAGCTCGAGCGCCTCTACGATTCGTTGAAGCTCGAGTTCGACTGCGTTTCCAAGGAGAAGC ACAAGCTCCAGGAAGAGGTGATGAAGTTGAGAGAAATGTTGGGAGAGCAAGAAGGGACCATGAATAAACATCAAGTGTCGACCGCGGTGTACACAGACTT CTCTAAGATGGAGGAGAGCACATCGGCCGGTCGGGGTAGTTCAAGGAAGATGATGATAATCGGTCAGCATCATATGTTGACAACGAGGAACGAGAACAGT CATGATATGGTTGTGGATGAATATAACCCATCAATAGTTGTATCTTCTCCAACCTATTTGAGTGTCCTTCCATCTTATAATCCTTAG
AA sequence Show only first row Show all	>Lus10035583 pacid=23147527 polypeptide=Lus10035583 locus=Lus10035583.g ID=Lus10035583.BGIv1.0 annot-version=v1.0 MDMKQLAEAAAYHHQQQQGMTMSPATSSEKTMSYGSSSCGSYAANQQHQMMMMMMDQKKKRLTNHQLESLETNFQEEIKLDPDRKMKLSRELGLHPRQIA VWFQNRRARWKAKQLERLYDSLKLEFDCVSKEKHKLQEEVMKLREMLGEQEGTMNKHQVSTAVYTDFSKMEESTSAGRGSSRKMMIIGQHHMLTTRNENS HDMVVDEYNPSIVVSSPTYLSVLPSYNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10035583 [exp]	0	1
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10014938 [exp]	1.0	0.9749
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	9.5	0.9695
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	9.8	0.9696
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	12.0	0.9696
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	13.9	0.9696
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	15.5	0.9696
AT3G09080			Transducin/WD40 repeat-like su...		Lus10021129 [exp]	16.6	0.8553
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	17.0	0.9696
					Lus10011636 [exp]	18.3	0.9696
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000202 [exp]	19.3	0.8547

Compare expression of checked genes

Lus10035583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.