Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53020 206 / 5e-69 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 206 / 6e-69 RPL24A ribosomal protein L24 (.1) AT2G44860 75 / 2e-17 Ribosomal protein L24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008640 [exp] 221 / 9e-75 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1) Lus10024560 [exp] 208 / 1e-69 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1) Lus10032198 [exp] 208 / 1e-69 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1) Lus10006314 [exp] 202 / 3e-66 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1) Lus10029583 [exp] 202 / 4e-66 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1) Lus10014637 [exp] 89 / 2e-23 AT2G36620 100 / 6e-28 ribosomal protein L24 (.1) Lus10020552 [exp] 80 / 2e-19 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139500 [exp] 209 / 2e-70 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139400 [exp] 209 / 3e-70 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 207 / 3e-69 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.004G085300 [exp] 205 / 1e-68 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 191 / 7e-63 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.009G148500 [exp] 76 / 7e-18 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 76 / 9e-18 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Lus10035584 pacid=23147481 polypeptide=Lus10035584 locus=Lus10035584.g ID=Lus10035584.BGIv1.0 annot-version=v1.0 ATGGTGCTCAAGACGGAGCTCTGCAGGTTCAGTGGGCAGAAGATTTATCCAGGGAGAGGGATCAGATTCATTCGTTCTGACTCTCAGGTGTTCCTCTTTG CCAATTCAAAGTGCAAGAGGTATTTCCACAACAGGTTGAAGCCATCCAAGCTAACATGGACGGCAGTCTTCAGGAAGCAACATAAGAAGGACATTGCTCA AGAGGCAGTGAAGAAGAGGCGCAGGGCTACCAAGAAGCCTTACTCTAGGTCCATTGTTGGTGCAACCTTGGAGGTTATCCAGAAGAAGAGAACCGAGAAA CCCGAAGTTCGTGATGCTGCTAGGGAAGCTGCGATCAGAGAAATCAAGGAAAGAATCAAGAAGACGAAAGATGAGAAAAAGGCCAAGAAAGCAGAAGTGA GCAAATCCCAAAAGTCTCAACCTAAAGGCGGTGCTGGAAGGGCTGCCCCGGCAAAGGGTCCTAAGCTCGGTGGCGGCGGTGGAAAGCGCTGA
AA sequence Show only first row Show all	>Lus10035584 pacid=23147481 polypeptide=Lus10035584 locus=Lus10035584.g ID=Lus10035584.BGIv1.0 annot-version=v1.0 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAVFRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEK PEVRDAAREAAIREIKERIKKTKDEKKAKKAEVSKSQKSQPKGGAGRAAPAKGPKLGGGGGKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	2.0	0.9662
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	2.8	0.9658
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	6.0	0.9646
AT1G53760			unknown protein		Lus10037462 [exp]	6.0	0.9336
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	6.3	0.9613
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	6.5	0.9647
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	6.7	0.9536
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	7.7	0.9516
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	7.7	0.9608
AT2G20450			Ribosomal protein L14 (.1)		Lus10021170 [exp]	8.9	0.9523

Compare expression of checked genes

Lus10035584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.