Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03810 417 / 4e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 414 / 7e-146 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 379 / 4e-132 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 369 / 2e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 345 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 230 / 1e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G42170 229 / 8e-73 SGNH hydrolase-type esterase superfamily protein (.1) AT2G04570 226 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 218 / 8e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G40250 207 / 2e-64 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008639 [exp] 608 / 0 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 544 / 0 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 431 / 1e-152 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008635 [exp] 431 / 1e-152 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006856 [exp] 353 / 2e-121 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 352 / 3e-121 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 330 / 1e-112 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 239 / 5e-77 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 238 / 1e-76 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118300 [exp] 435 / 6e-154 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 389 / 1e-135 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 338 / 1e-115 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 297 / 3e-100 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 285 / 2e-94 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 225 / 4e-71 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 225 / 4e-71 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 224 / 4e-71 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G242800 [exp] 221 / 7e-70 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 219 / 4e-69 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10035585 pacid=23147378 polypeptide=Lus10035585 locus=Lus10035585.g ID=Lus10035585.BGIv1.0 annot-version=v1.0 ATGTGGGGAACAACAACAACCTCATCACTCTCATCAGAGCAAACTTCCCCCCCTTACGGAAGGGACTTCGCGGATCATAGACCGACCGGGAGGTTCAGCA ATGGAAAGCTTGCTATAGACATCACCGCTGACTTTCTGGGGTTTAACACATACCCCCCACCCTATCTAAGCCAGGATGCCAAGAACTTGGCAAATGTTGT GACTGGAGTCAATTTTGCTTCCGGTGCTTCTGGTCTGCTGGATGGAACAGCCCACCTATATGGAGCTGTTTCGTTGTCAAGGCAGCTGGAGAACTACAAG GAGTACAGAGAAACAGTCGAGAGCAAAGTAGGAATAGAGAACTCCAGCAACATATTCTCTAAAGGGATTCATCTTCTAAGCACCGGAACCAGCGATTTCA TTCAGAACTACTACATCAACCCTGTTCTCAAAGCTCTCTACACACCTGATCAGTTTTCAGACAAGCTCATGGAATCTTATGCCACCTTTATTCAGAACCT GTACGGACTTGGAGCAAGAAGGATTGGAGTGACATCACTGCCACCAACAGGTTGCTTGCCTGCAGCCATTACCCTCTTCGGGTTTGGGAGCAACGAATGC GTCGAGAGGCTCAACTGGGATGCAACTTCTTTCAACCAGAAGCTAAATGCTACTTCTCAAAGGATCGTAGAAGGACTCCCTGGTCTTAAAATCGTGGTGT TTGATATCTATAACCCGCTCTTGAACCTGATCAAGCACCCCAGCGACAACGGATTCGTCGAGGCGAGGAAGGCTTGTTGTGGGACTGGTGTCCTGGAGAC TGCATTTCTATGTAATGCAATGTCGCCGGGAACCTGTGCCAACGCTACCGAGTACGTGTTCTGGGACGGATTCCACCCTTCCGAAGCTGCCAACGGTGTC TTAGCTCAAGCCGTGCTTTCTCAAGGATTCGACCTCATATCGTAG
AA sequence Show only first row Show all	>Lus10035585 pacid=23147378 polypeptide=Lus10035585 locus=Lus10035585.g ID=Lus10035585.BGIv1.0 annot-version=v1.0 MWGTTTTSSLSSEQTSPPYGRDFADHRPTGRFSNGKLAIDITADFLGFNTYPPPYLSQDAKNLANVVTGVNFASGASGLLDGTAHLYGAVSLSRQLENYK EYRETVESKVGIENSSNIFSKGIHLLSTGTSDFIQNYYINPVLKALYTPDQFSDKLMESYATFIQNLYGLGARRIGVTSLPPTGCLPAAITLFGFGSNEC VERLNWDATSFNQKLNATSQRIVEGLPGLKIVVFDIYNPLLNLIKHPSDNGFVEARKACCGTGVLETAFLCNAMSPGTCANATEYVFWDGFHPSEAANGV LAQAVLSQGFDLIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	0	1
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	1.0	0.9193
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	2.4	0.9072
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	3.5	0.8875
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10031578 [exp]	4.2	0.8662
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042025 [exp]	4.5	0.8741
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	6.3	0.8869
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	11.4	0.8339
AT1G60370			F-box and associated interacti...		Lus10008162 [exp]	15.0	0.7663
					Lus10003629 [exp]	15.6	0.8183
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	16.5	0.8324

Compare expression of checked genes

Lus10035585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.