Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36640 147 / 1e-39 ATECP63 embryonic cell protein 63 (.1) AT3G53040 99 / 3e-22 late embryogenesis abundant protein, putative / LEA protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008638 [exp] 369 / 2e-124 AT2G36640 249 / 4e-77 embryonic cell protein 63 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060600 [exp] 175 / 1e-50 AT2G36640 200 / 2e-59 embryonic cell protein 63 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02987 [flax] [poplar] LEA_4 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10035586 pacid=23147650 polypeptide=Lus10035586 locus=Lus10035586.g ID=Lus10035586.BGIv1.0 annot-version=v1.0 ATGGCGTCGGAAAAGGAAAGGATGGAGAAGGCCGAGGAGGCGGCGTGGGAAGCTGCCTACAATCTGAGGGAAGTGAATCGCCAGAGAGATTACGAAGAGC GAGCTAAGACCGTTGAATCGAACATTGTTCCTCCGGCAGTGGACAAAGACCATATGACATCTGGCGGAGGGGGAGTACATCAAGACCAGCAGCCTGGAGT GTTCGGCTCAATGTTCCGGGCGGTGGCGGAAACTGTCGGCCATGCTAGGGATGCAGTGGCCGGCAAGGGGCACGAAGTAGCTGATAAAACAAGTTCAGCT GCTGAAACGGTTGCGGAGACGGCAGGGGAGACCAAAGAAGCCGCAAAGGAGAAGGCGAGGAAGACGAAGGATTACACGGCGGAGACGGCTAACCAGGCGG CGGAGAAGGCCGGGGAGATTAAGGATTCGGCTAAGGAGAAGGCGAACCAGGCGGCCGAAAAGGCCGGGGAGGTGAAGGATACTGCCAAGGGGAAAGCAGA GGAGTACAAAAACTCTGCAGCTGAAAAAGCAAGGGAAACGAAGGATTATACGGCGGAGAAGGCAAACGAGGTGGCAGAGAAGGCGAAAGAGACAAAGGAT TATACCGCCGAGAAGGCGAAGGAAGGGACGGAGACGGCGGGGAATAAGCTGGGAGGCGTTGCGCGGATGGTTATGGATTTCTTCTCCGGGAAGAAAGATA ATGAAGAAAAGACTGATGACAACAACGCTACACGCGTAACTCAGCCGATGATGGAGGAGAGGAGGAAGGAAGCGGGGGAGGAAACGAGGCGGAGAGTTGA AGAGCTGAAGCTTCAGGATGAGGCCGAGAAAGCCGACTACCAACACAGAAAAGAGGAGGCCGAGAGGGGGAAGGCGGCGAGGGACAACATGTACGGGGGG ATGGGGCTGGGGACCATCGTGGAGTCTGTAAAGAGCAAACTGACAAAGCCAGCCGGCGTGGTGGAGGAGACGGTGGCCGCCAGGGAGCACGATGGAACGG GAAGGGTAAGAGTGGATAGTCGGAAGGAGCAGGAGGAGGAGGGTAAAATTCCGTTGGAGAAGACTCGGCCGGGAGCGGTGGCGGCGACGCTGAAGGCGGC GGATCAAATGACAGGCCAGACTTTCAACGATGTTGGACGGATGGGGGATGAGGGAGTTGTACACGTGGAGGAGGTGGTTCGGCGTAAGGGGAAGTAG
AA sequence Show only first row Show all	>Lus10035586 pacid=23147650 polypeptide=Lus10035586 locus=Lus10035586.g ID=Lus10035586.BGIv1.0 annot-version=v1.0 MASEKERMEKAEEAAWEAAYNLREVNRQRDYEERAKTVESNIVPPAVDKDHMTSGGGGVHQDQQPGVFGSMFRAVAETVGHARDAVAGKGHEVADKTSSA AETVAETAGETKEAAKEKARKTKDYTAETANQAAEKAGEIKDSAKEKANQAAEKAGEVKDTAKGKAEEYKNSAAEKARETKDYTAEKANEVAEKAKETKD YTAEKAKEGTETAGNKLGGVARMVMDFFSGKKDNEEKTDDNNATRVTQPMMEERRKEAGEETRRRVEELKLQDEAEKADYQHRKEEAERGKAARDNMYGG MGLGTIVESVKSKLTKPAGVVEETVAAREHDGTGRVRVDSRKEQEEEGKIPLEKTRPGAVAATLKAADQMTGQTFNDVGRMGDEGVVHVEEVVRRKGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Lus10035586 [exp]	0	1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	4.5	0.8897
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	5.3	0.8882
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	5.5	0.8835
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	7.4	0.8807
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	10.2	0.8592
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	11.0	0.8818
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	13.6	0.8781
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	15.7	0.8518
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10001895 [exp]	16.6	0.8435
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	17.0	0.8234

Compare expression of checked genes

Lus10035586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.