Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03800 623 / 0 EMB166, EMB175, EMB1899 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 358 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 358 / 2e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 352 / 1e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14050 345 / 4e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 348 / 2e-110 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33170 352 / 3e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 345 / 8e-110 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 338 / 2e-108 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 345 / 3e-108 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008637 [exp] 1127 / 0 AT5G03800 902 / 0.0 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034715 [exp] 353 / 3e-114 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018278 [exp] 350 / 3e-113 AT4G14050 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 352 / 2e-110 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 350 / 2e-109 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 341 / 6e-109 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 352 / 6e-108 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029436 [exp] 337 / 3e-107 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 349 / 5e-107 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096400 [exp] 721 / 0 AT5G03800 993 / 0.0 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 364 / 1e-117 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 362 / 3e-116 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 362 / 2e-115 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 360 / 2e-115 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G208000 [exp] 354 / 5e-114 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 356 / 2e-112 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G321700 [exp] 348 / 5e-112 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 348 / 1e-110 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 352 / 2e-110 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035587 pacid=23147565 polypeptide=Lus10035587 locus=Lus10035587.g ID=Lus10035587.BGIv1.0 annot-version=v1.0 ATGGGTAGTTTGGATCTTTGCAATATCTTGATTGGGTTTTATGCCAAATGTGGAAGTTTGAGAGATGTGCTGACTGTATTTGAGAGGATGCCAATCAGAG ATGAAGTAACTTGGGCACAGTTGATCACTGCATATATGAAATCTGGACTGTTGGGCAAGGCTGTAGAGACATTTGAGAACATGCCCGAGTCTGAGAGAAG CTCCATCTCTTACAATGCTATTTTGGCAGGGTTTATCCACAACGCAGAAGGATTGAATGCGCTGAATTTCTTCGTGATGATGATCCATAACTGTATAGAG CTCTCTGATTTCAGCTTAACTCGGATTGTAACGGCGTGTGGATTGATGGCAGACATTGAAATCAGTAAGCAAGTCCATGGCTTCGTCACCAAGTTCGGAC ACGGTTCAAATGCTTACATCGAAGGGTCTTTGTTAGATATGTACACAAGGTGTGGAAGAACCAAGGATGCAGAGAAACTATATCAGGAAACGCCATCCAA CCAGGAAACACCAGCTGCTTATACCTCAATGCTAAGTGGGTACGCTCGAAACAGGCAGCCACATAAGGCGGTCGCTCTTTTCGTCCGCAGTTTATCAGAA TCCACTCTGGTTATGGACGAACTTGTACCCACCACAGTCCTTGAAGCTTGTGGAACTTTAGCCTTCCATGATCTGGGGACACAACTCCATTATTATGTTC TTAAAGCAGGCTTCCAAGCTGATCTAGGTGTGATGAACTCTCTCATCAACATGTATTGTCAGTGCTTCAACATGGCCGAGGCCAGACTATTCGAAGCCAT GAAATCTCGTGACGTTTCGTGGAACACCCTGTTAGCAGGCCATGTCCTCCACAGGCAAGGTGACGCAGCTCTACTTCTCTGGTCAAGAATGCAAAACTCA GGAGTAAGACCAAACTCCATTACCTTTGTTTCAATCATTTCAGCCTACAGCCATACGTCATCCAACTTAGTTCACCACTGCCATACGATGTTCCACTCGA TGAAGCCAATCTACAACGTGGAGCCAACTTCAGAACATTACGCACCATTCATTGGTGTCCTTGGTTCCTGGGGACTCCTCCAAGAAGCAGAAGAGACAAT CCTGAACATGCCATTCGAACCTGAAGCCAATGTATGGCGAGCTTTACTCAACAGCTGCATGATACAGGTGAACTCGGATGTCGGGAGAAGAGTTGCAAAA CGAATCCTGGAAATGGAGCCGAAGGATCCATCAACATTCGTCCTTGTCTTGAATCTCTACTCTGCATCAGGAAGATGGCACTGCGCCGAATCAACGAGAC AAAAAATGAAAAAAAAGAAGATGTTTAAGCACCCATGCAAGAGCTGGATCATCCACGATAACAGGCTCCATTCTTTCTACGTTCGCAACAGGTATCATCC TCAGTCCAAGGACATCTACAGTGGGCTGGAGATTCTGATAATGGAGTGCATGAAATCCGGGTACAAACCGGACACCAGCTTTGTACTGCACGAGGTGGAA GAGTTCCAGAAGAAGGAGTTCTTGTTCTACCACAGTGCGAAGCTAGCTGCTACTTACGGCCTTCTAATGACGAAGCCACCGGAGATAGTTAGAATCGTGA AGAATGTTCATGTCTGTGGGGATTGCCATAGCTTTCTGAAGCATGTCTCTGCTGTTTCCAGGAGGGAGATCCTGTTAAGAGATGCTTCTGGGTTCCATTT CTTCTCTGATGGCCATTGTTCTTGCAATGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10035587 pacid=23147565 polypeptide=Lus10035587 locus=Lus10035587.g ID=Lus10035587.BGIv1.0 annot-version=v1.0 MGSLDLCNILIGFYAKCGSLRDVLTVFERMPIRDEVTWAQLITAYMKSGLLGKAVETFENMPESERSSISYNAILAGFIHNAEGLNALNFFVMMIHNCIE LSDFSLTRIVTACGLMADIEISKQVHGFVTKFGHGSNAYIEGSLLDMYTRCGRTKDAEKLYQETPSNQETPAAYTSMLSGYARNRQPHKAVALFVRSLSE STLVMDELVPTTVLEACGTLAFHDLGTQLHYYVLKAGFQADLGVMNSLINMYCQCFNMAEARLFEAMKSRDVSWNTLLAGHVLHRQGDAALLLWSRMQNS GVRPNSITFVSIISAYSHTSSNLVHHCHTMFHSMKPIYNVEPTSEHYAPFIGVLGSWGLLQEAEETILNMPFEPEANVWRALLNSCMIQVNSDVGRRVAK RILEMEPKDPSTFVLVLNLYSASGRWHCAESTRQKMKKKKMFKHPCKSWIIHDNRLHSFYVRNRYHPQSKDIYSGLEILIMECMKSGYKPDTSFVLHEVE EFQKKEFLFYHSAKLAATYGLLMTKPPEIVRIVKNVHVCGDCHSFLKHVSAVSRREILLRDASGFHFFSDGHCSCNDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035587 [exp]	0	1
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10022290 [exp]	2.4	0.9172
AT4G02210			unknown protein		Lus10013421 [exp]	4.1	0.8824
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	4.4	0.9215
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	7.7	0.9172
AT1G74120			Mitochondrial transcription te...		Lus10007988 [exp]	12.0	0.8239
AT1G53800			unknown protein		Lus10003930 [exp]	12.0	0.8845
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	13.1	0.9105
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	13.9	0.8689
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	17.3	0.8701
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	18.7	0.8987

Compare expression of checked genes

Lus10035587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.