Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53090 1327 / 0 UPL7 ubiquitin-protein ligase 7 (.1.2) AT3G17205 329 / 8e-96 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT1G70320 208 / 3e-54 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 202 / 3e-52 UPL1 ubiquitin-protein ligase 1 (.1.2) AT4G12570 125 / 7e-29 UPL5 ubiquitin protein ligase 5 (.1) AT5G02880 99 / 2e-20 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 94 / 6e-19 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008636 [exp] 2026 / 0 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10017098 [exp] 234 / 2e-63 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10032830 [exp] 213 / 2e-55 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 211 / 8e-55 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 195 / 4e-50 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10037820 [exp] 130 / 1e-30 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10010493 [exp] 130 / 2e-30 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10019908 [exp] 106 / 7e-23 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10003792 [exp] 95 / 3e-20 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096500 [exp] 1541 / 0 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.008G101300 [exp] 317 / 1e-91 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.010G150000 [exp] 317 / 3e-91 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.002G110500 [exp] 214 / 6e-56 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 205 / 3e-53 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 199 / 2e-51 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.006G011701 [exp] 132 / 5e-31 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 120 / 1e-27 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G085200 [exp] 107 / 3e-23 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.004G174700 [exp] 103 / 5e-22 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10035589 pacid=23147544 polypeptide=Lus10035589 locus=Lus10035589.g ID=Lus10035589.BGIv1.0 annot-version=v1.0 ATGGACGAGTCCCGCAAGCAGCAGGTTTCCTTAAGGGGAGCAAGTGCGAAAGAGATCTCTCGGGACGCCCTGCTCGAGAAGCTCGCCCAGGAAAGGGAGC TCCGCAATTACGCTAGGCGAGCTTCTGCTGCTGCTATCTTCATCCAGAGGGTCTGGAGGCGCTATAGCTTGACAAAGAGGATAGCTTTGCAACTTCAAGG GGAATGGGAAGCTATGGTGAATGGTCATGATGGTTCAAGGTCTGCTGGTTGGATTTCTGGCAGTGTTTTAAGACCTTTGATTTTCTTCGTTGATGTTTTA TCCACTCGGCCTCAGAAGATCCGGACTGTTGATAGCAACTGCATACATAGTTGCTTTAAGATCCTGCTGGAGAGTGTAAATTCTACTGCATTGGGTACAC TTGATGAACGGAGAACGTGGACCTATCAAACACGGAAGTTGATTGCTCTCTGCTCATTTGTCCTTTCGGAATGTGATAGAACTATTGCCAGGGGCAGAGA TATCATTACTCTGGCCTCCCTTGGAATGCGTATTCTTGTCGTGTTATCTGACCAAAAGGGGTGGAAGAGTATTGCTACCGGTGGTCCTGAGGATGCAGAA ACAGCTGTGAAGCATTTGGTTAGATTTATTGGAAGTCCTGAAAGTGGCTTTTACAAATCCTTAAGAAGATACATTGAGAGACTAGAAATGCCAATTCAAT CTCAGGCAAAGAAGGTGGCACAGGCAGACGATCTGTTTCTGGTAACTGCTAGTGCAGTAACGTTAGCTCTACGCCCGTTCCATGCTACAAACTCTGATTC TAATGGCTCTGGTCTTGTGGACACGCAATTTGCAGTCATGCATTACTGTTTGTCTGTTCTTACAATTCCTCAACTGACTAAACGATTACCTATGGTGCTT CTACCAGCTCTGAAGCACAAGACTGTTCTCTCACCATGCCTCAAGACAATGCTGATTTTGGGAGATGATATTTTTACTGAGATGGCAAGGATGGTTTACT TGAAAGTACCACATTCTGCGATGGTCATTCCTCCTGTGGGCTGGACTCTTGCAAACATAGTGTGTCTTGCTGCTAGCACTGAAAAAGATTTTACAGGTCC TGGTGGAATATTTCAGGATACAGACTATGTGTTCTATGTACGATTAGTTGCCAAACTTTCAGATAACCTATTGTCATGGTTTAGTGATGGAGGATGGTCT GAGCATCAAGATCCTCAAGTTAATCCTGAAACATCAGTCAAGCCTGTTAAATTTTTTCCCGAGAACGAGGCTGCACAGGCCTTAATAACGTCATATGTGG AGCTACTTAAGCCTATTTGTCAGCAGTGGCACCTGAAAAAGCTTCTCTCGGTCACAAAAACGGCTGCTAGTTCTGAATCTTCAAGTCCAAGTTGCCCGGG AGCATTGGAGTTAATCGATATTGCATATTTTTATTCATACATGCTCAGAATCTTCTCTGTCTTAAATCCCATGGGAGCTTTGCCAGTTCTCAATATGCTG TCATTTACTCCTGGATTCCTTGTCAGTTTATGGCTAGCACTGGAAAGTTCACTCTTCCCAGGTCAGATTTCTGTGGGCAATGATGCATATAGTAGCAGAA CTTCAAAGAACGCAAAAGATGATGTTCTTGAAAAGAAACAGAAACCACCTAACAAGGATAGAGGAATTAAATGGGGTAACGTACTAAATAGAGTGACAAG TAAGCCACAAGAAGGCTATGTTGCTGTGTCTACAAGTGATGGACTACCTAGTCATGAAGTTATCGAGGAGGGGAATGATATTTGGAATGTAGAAACTCTG AAGTATGGTCCATCAAAAGTTACTAAAGATCTGTCATGTCTACTTCATCTGTTCTGTGCTACCTATTCTCACATGCTGTTAGTTCTTGATGATTTAGATT TCTATGAAAGACAGGTTCCTTTCTCGCTGGAGCAACAACGGACAATTGCATCAGCATTGAATACACTAGTCTATAATTCCTTTGTCAATAATAACTCTCA GCATAATAGGCCTTTAGTTGATTCCGCAATTAGATGTTTGCATCTATTGTATGAAAGGGATTGCAGGCACCAGTTTTGCCCACCTTCCCTGTGGCTTTCA CCAGCAAAAAGGAGCCGGCCTCCTATTGCTATTGCTGCTCGAACCCATGAGATCATGCTGACAAATGTAAGGTCAGATGATGCTGTGGCAAGTCCAGTTC TTAGCTCTGTGGTAACTGTTACTCCTCACATATATCCATTTGAAGAAAGGGTTGAGATGTTCAGAGAATTTGTCAACAGAGATAAAGCATTTCGGAGAAT GGCTGGGGAAGTTACTGAACCTGGTTCACGAGCAGTTGAGATTGTAGTTCGCCGGGGTCATATTGTTGAAGATGGATACCGTCAACTGAATTATCTTGGA CCTAGGTTGAAATCATCGATTCATGTTTCATTTGTTAGTGAATCTGGGCTTCCAGAGGCAGGATTGGACTATGGCGGGTTATCTAAAGAGTTCTTGACTG ATATATCAAAAACAGCATTCTCTCCAGAATATGGTCTTTTCTCCCAGACTTCGACCTCAGATAGACTTCTAGTTCCAAACCCAGCTGCGAGATATTTAGA GAACGGCATCCAGATGATTGAGTTCCTTGGAAGAGTTGTCGGGAAAGCTCTTTATGAAGGGATATTACTAGATTACTCATTTGCACATGTATTTGTGCAA AAGCTGTTAGGACGGTATAGCTTTCTTGATGAGCTATCAACTCTTGATCAAGAGTTGTACAGAAATCTTATGTATGTAAAGCATTATGATGGTGATGTCA AGGAACTCTTGCTCGACTTCACAGTTACTGAGGAATCATTTGGTAAAATGCATGTTATTGAGCTCAAACCTGGTGGCAAAGACATTTCTGTGATCAACGA GAACAAGATGCAATATGTTCATGCTATGGCAGATTATAAGCTTAACAGACAGATATTGGCATTTTCAAATGCCTTCTATAGGGGTTTGACCGATCTTATA TCACCATCATGGCTGAAGCTATTTAATGCAAGTGAATTCAATCAGTTACTTTCCGGTGGTGACCTTGACATTGACGTTGATGATCTACGAATGAACACAC GATATTCTGGTGGCTATTCGGAAGGAAGTCGGCCGGTGAAACTTTTCTGGGAGGTGGTTAAAGGTTTTCAACCAAATGAGCGATGTTTGCTTCTGAAATT TGTGACAAGCTGTTCTCGTGCTCCTTTGCTTGGGTTCAGACACTTGCATCCTTCCTTTACTATCCACAAGGCATGCCCATCATTCGCTGTTAGTTGCGAT TCTTCCATCTGGGCAAGCATTGGAGGACAGGATGTTGACAGGCTCCCTTCGGCTTCAACTTGCTACAACACTCTGAAGCTCCCAACATACAGAAGAGCCA GCACTTTGAGAGCAAAGCTTCTTTATGCTATCACTTCCAACACAGGATTTGAACTTTCTTAA
AA sequence Show only first row Show all	>Lus10035589 pacid=23147544 polypeptide=Lus10035589 locus=Lus10035589.g ID=Lus10035589.BGIv1.0 annot-version=v1.0 MDESRKQQVSLRGASAKEISRDALLEKLAQERELRNYARRASAAAIFIQRVWRRYSLTKRIALQLQGEWEAMVNGHDGSRSAGWISGSVLRPLIFFVDVL STRPQKIRTVDSNCIHSCFKILLESVNSTALGTLDERRTWTYQTRKLIALCSFVLSECDRTIARGRDIITLASLGMRILVVLSDQKGWKSIATGGPEDAE TAVKHLVRFIGSPESGFYKSLRRYIERLEMPIQSQAKKVAQADDLFLVTASAVTLALRPFHATNSDSNGSGLVDTQFAVMHYCLSVLTIPQLTKRLPMVL LPALKHKTVLSPCLKTMLILGDDIFTEMARMVYLKVPHSAMVIPPVGWTLANIVCLAASTEKDFTGPGGIFQDTDYVFYVRLVAKLSDNLLSWFSDGGWS EHQDPQVNPETSVKPVKFFPENEAAQALITSYVELLKPICQQWHLKKLLSVTKTAASSESSSPSCPGALELIDIAYFYSYMLRIFSVLNPMGALPVLNML SFTPGFLVSLWLALESSLFPGQISVGNDAYSSRTSKNAKDDVLEKKQKPPNKDRGIKWGNVLNRVTSKPQEGYVAVSTSDGLPSHEVIEEGNDIWNVETL KYGPSKVTKDLSCLLHLFCATYSHMLLVLDDLDFYERQVPFSLEQQRTIASALNTLVYNSFVNNNSQHNRPLVDSAIRCLHLLYERDCRHQFCPPSLWLS PAKRSRPPIAIAARTHEIMLTNVRSDDAVASPVLSSVVTVTPHIYPFEERVEMFREFVNRDKAFRRMAGEVTEPGSRAVEIVVRRGHIVEDGYRQLNYLG PRLKSSIHVSFVSESGLPEAGLDYGGLSKEFLTDISKTAFSPEYGLFSQTSTSDRLLVPNPAARYLENGIQMIEFLGRVVGKALYEGILLDYSFAHVFVQ KLLGRYSFLDELSTLDQELYRNLMYVKHYDGDVKELLLDFTVTEESFGKMHVIELKPGGKDISVINENKMQYVHAMADYKLNRQILAFSNAFYRGLTDLI SPSWLKLFNASEFNQLLSGGDLDIDVDDLRMNTRYSGGYSEGSRPVKLFWEVVKGFQPNERCLLLKFVTSCSRAPLLGFRHLHPSFTIHKACPSFAVSCD SSIWASIGGQDVDRLPSASTCYNTLKLPTYRRASTLRAKLLYAITSNTGFELS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	0	1
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	1.4	0.9633
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	6.5	0.9427
AT1G58230			binding (.1)		Lus10042867 [exp]	7.5	0.9575
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	8.8	0.9542
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	9.4	0.9072
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	9.8	0.9412
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013094 [exp]	10.2	0.8993
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	10.7	0.9533
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10009720 [exp]	10.9	0.9497
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	11.1	0.9540

Compare expression of checked genes

Lus10035589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.