Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 423 / 6e-149 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 414 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 412 / 8e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 360 / 5e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 231 / 2e-73 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45960 231 / 3e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 231 / 4e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 229 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 227 / 6e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008635 [exp] 627 / 0 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 466 / 1e-165 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008639 [exp] 455 / 2e-161 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 432 / 8e-153 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006856 [exp] 370 / 9e-128 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 370 / 9e-128 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 335 / 6e-114 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 238 / 3e-76 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 237 / 1e-75 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118300 [exp] 462 / 4e-164 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 420 / 1e-147 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 338 / 1e-115 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 309 / 2e-103 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 292 / 8e-98 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 250 / 7e-81 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G219700 [exp] 249 / 2e-80 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 243 / 7e-78 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 239 / 2e-76 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 234 / 2e-74 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10035590 pacid=23147349 polypeptide=Lus10035590 locus=Lus10035590.g ID=Lus10035590.BGIv1.0 annot-version=v1.0 ATGGGTACTGTTGAATGGGGAGCTGCAGTTCTGGTTCTTCTTGCTGTGTTCCATTACTCATCATCTTTGGAGACTCCATTTTTTGACGTGGGCAACAACA ACAATCTCACTACTATCATCAAGGCCAACTTCCCCCCTTATGGGAGGGACTTTGTTACTCATACACCAACTGGAAGGTTCTCCAATGGAAAGCTGGCTAT AGACTTCACTGCTGACTATCTGGGATTTGACACATACCCACCACCTTATCTAAGCCAACAAGGTAGAAGAGGAGATGTTCTTACTGGAGTCAATTTCGCT TCGGCTGGTTCGGGTCTCTACGATCCAACAGCATTGCTATATGGAGCCATTCCGTTGACACTGCAGCTGAACTACTACAGGGCGTACCGGGCAAGAGTGG AGAACATAGTTGGGAGAGACAGTGATATATTCTCCAAGGGGATCCATCTTATAAGTGCTGGAACCAGTGACTTCATTCAGAACTACTACATCAACCCTCT TCTGTATGGAGTGTTGACTCCTGATCAATTCTCCGACCTGCTCATGAGATCTTACTCTAGCTTCATTCAGAACCTGTATAACCTTGGAGCAAGAAGGATT GGAGTGACAAGCCTGCCGCCAATAGGATGTTTGCCAGCAGCTATCACCCTCTTTGGCCTTGGGAGCAATCAATGTGTCGAGAGGCTAAACCGCGATGCTA GTTCATACAACCAGATTCTGAACCGAACTTCTCAGAACCTTATAGCAGTAATGCCTGACCTCAAACTTCTTGTCTTTGATATTTACCAGCCCCTCTTAAG CCTGATTGCCAAGCCCGGTGACAGTGGGTTCTTTGAGGCAAGAAGGTCTTGCTGTGGGACAGGTACCCACGAAACCTCAGTGCTGTGTAATGCAAGATCT ATGGGAACGTGTTCCAACGCTACACAGTATGTGTTCTGGGACGGATTCCATCCATCTGAAGCAGCTAATGAGGTCCTAGCACAAAGCCTGCTTGAAACAG GAATCTCCCTCATTTCGTGA
AA sequence Show only first row Show all	>Lus10035590 pacid=23147349 polypeptide=Lus10035590 locus=Lus10035590.g ID=Lus10035590.BGIv1.0 annot-version=v1.0 MGTVEWGAAVLVLLAVFHYSSSLETPFFDVGNNNNLTTIIKANFPPYGRDFVTHTPTGRFSNGKLAIDFTADYLGFDTYPPPYLSQQGRRGDVLTGVNFA SAGSGLYDPTALLYGAIPLTLQLNYYRAYRARVENIVGRDSDIFSKGIHLISAGTSDFIQNYYINPLLYGVLTPDQFSDLLMRSYSSFIQNLYNLGARRI GVTSLPPIGCLPAAITLFGLGSNQCVERLNRDASSYNQILNRTSQNLIAVMPDLKLLVFDIYQPLLSLIAKPGDSGFFEARRSCCGTGTHETSVLCNARS MGTCSNATQYVFWDGFHPSEAANEVLAQSLLETGISLIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	0	1
AT3G51710			D-mannose binding lectin prote...		Lus10025259 [exp]	1.4	0.8898
AT5G14610			DEAD box RNA helicase family p...		Lus10010718 [exp]	4.0	0.8525
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	4.2	0.8512
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	5.5	0.8356
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	5.9	0.8344
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	8.4	0.8020
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	8.5	0.8182
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	10.0	0.8412
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	10.1	0.7748
AT3G20340			unknown protein		Lus10021518 [exp]	10.4	0.8078

Compare expression of checked genes

Lus10035590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.