Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52890 715 / 0 KIPK KCBP-interacting protein kinase (.1.2) AT2G36350 709 / 0 Protein kinase superfamily protein (.1) AT5G03640 667 / 0 Protein kinase superfamily protein (.1) AT5G47750 561 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 533 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 526 / 6e-179 D6PK D6 protein kinase (.1) AT2G44830 522 / 2e-173 Protein kinase superfamily protein (.1) AT5G40030 509 / 2e-172 Protein kinase superfamily protein (.1) AT3G27580 507 / 2e-170 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT3G12690 476 / 2e-158 AGC1.5 AGC kinase 1.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008634 [exp] 1628 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10020571 [exp] 608 / 0 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 600 / 0 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10016629 [exp] 554 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 549 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 546 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 531 / 1e-178 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 521 / 1e-176 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 507 / 6e-171 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114900 [exp] 904 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.004G186300 [exp] 650 / 0 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 644 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 551 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 545 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 543 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 536 / 3e-179 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 529 / 2e-177 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.017G075400 [exp] 521 / 8e-177 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 475 / 1e-157 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035591 pacid=23147470 polypeptide=Lus10035591 locus=Lus10035591.g ID=Lus10035591.BGIv1.0 annot-version=v1.0 ATGGGGTCATATTCAGGCACGTCTGAGATCGTTGAAGCAAGGGAAGAAGATACAGATTCCGTTATCCTTTCGAACAAAGGAGCTTATCGATCTTATTCCG GTATAACCCTCGGCGATCGGAGGCCGTTGAAGCTGGGGGACAAGGATTCCCTAGAGGATGAAATCAACCAGCTCTTTGAAGCCATCAGTCTCAAGAATGC TTCCAAGGGTTTGGGAGCTTCGAATAATCAAGCGAGCACGAGTTCGAGCCCCTTGGCGATGAGGAGCGCAATGAAGAGGCCGGTCGCTGTTGGAGCATCG TATTCGTTGTGTAATTCGCCTCGGGTCAGTAGCTCGGAAGGTGTGTCTCTGAAGCAGGCATTGAGGGATCTTTGTCTCTCCAAGGCATCTGAAATGGCTG CTATGAAAAGGATGTCTTCTAAGCCGCCATTGGCTTCGCCTAGGGTTTCTGAAGCTGGAGGGAAGATTAAGAACATGTACAGTAATTCTTCAGTGTCTGT TGAAACAACCAACAAAGATTTTGGTAAAGGGCCAATGGTGGAGGAAATCAGCAAGTCGAATTCTTCGCAGAAAATGCTTCGAGTCGAGCTCCCTAAGATG CGGTCGTTGAATCCGAGCGCCCAGTCTTCTCCTAGGTTGCAGGGATTGAAGTTTTCATCAAGTCAAAGCGCTCAGTCTTCCCCTCGGTTGCAGTCGTTGA AGACTGAGCTACAGAATGAGATTCAGTTGGAATCTAAGAAAGGTGGAGGAAGCCATAGTGGTAGCAACATGTCATCATCATCTCCAAGATTGATTGATCA GGAGAAGGTGCAAAATGGTACCGATACCGTTCATCAAACCCCAAATCCGATTGTTTCTTCTGCAGCAAGCAAAGTCGGAAGCCAAGCATTGAACTTTTCA TCCAAGAGCGCTCATTCTTCGCCTCGATTGCTTCCTGCTGTTGCATCCAAGATGCCAAAGGAGAGGGTTACCATTGCATCTTCCATCGCTTGTCCCGAGT CACCCGATAGCAGTCCCGTAAAAAAAGCTCCTGTCTTTACAAAGACCAGTAGAAAAGGCAGGTTGCCCGCGAAGCCTAGGTCGACCAAGAACACGAAGCA TGCTCGTTCGGTTAAAACGGTGATAAGAAGCAGGACCAGCATCAAGAAGAAAAGAAAACCGTCCGGTTCGAATTCCGTGGAATCGGGTTCGGATGAAGGT ATTCCCGGTTCGGTGGTCCCTACTCCCCCAACCCAGCTAGTTTGCCAGAAATGTCAATGTTCACTATCAAATGCAAGGGCAGGTCCTGTTGAGGACCCAA TGGATTCAGTTGTGGTGAAATCGGAATTCGCAAAGAAGAATTTGGAAAGGGGGAAGGGGGGCGAGTTTTCTCAAAGCTCGAAGAGTAGCTTGGGGGACTA CAGCAATAGTACTAGTACAAGCAACAGCGAGGAGAGCAATGCGAGCAGGTTTAGCTGCAGCAACAGGCCGCACATGTCAAAGGATGCCAGGTGGCAGGCT GTTCGTCACGTTAAGACGAGGGACAAAGGGTTGACATTGGCTCACTTCAATCTCTTGAAGAAGCTCGGGTGTGGAGATATAGGAACGGTGTACCTTGCTG AGCTTGTAGGTACGAATTGTCTCTTCGCAATTAAAGTCATGGATAACGAGTTCTTGGCTAGGAGGAAGAAGCTTCCGAGGGCTCAAACCGAAAGGGAGAT ACTTCGGATGTTGGATCATCCTTTTTTGCCTACGCTTTATGCGCATTTCACTTCCGATAATCTGTCGTGTTTGGTTATGGAGTATTGTCCTGGTGGGGAT CTTCATGTGCTCAGGCAGAAGCAACTCGGAAGATGCTTCCCCGAGCCGGCTGCCAGGTTTTACGTTGCTGAAGTCCTCCTTGCTCTGGAGTATTTACACA TGCTCGGAGTCGTGTATCGGGACCTGAAACCGGAGAACATCCTGGTTCGAGAAGATGGACACATTATGCTCACAGATTTTGACCTTTCCTTACGATGTAA CGTTAGTCCTACTCTCCTGCAATCATCATCAACAACCTTCATGGAGCCGCCTCGAATGTCCGGTCCATGCACATCGTCAAGCTGCATCGACCCTTTCTGC ATCGAGCCATCATGCCGCGTCTCGTGTTTCACTCCTCGAAGAATGTTACCCCCTTCTGCCGCAAAGGCAAGGAAGGCCAAAGCCGATCTTGCAGTTCATC TCCGAACATTGCCTCAGCTAGTAGCCGAGCCCACTGATGCTCGTTCAAACTCGTTCGTCGGTACCCATGAGTACCTAGCTCCTGAGATCATCAAAGGAGA TGGCCACGGTGCAGCGGTCGATTGGTGGACGTTCGGGATATTCCTGTACGAGCTTATATACGGTAGGACGCCGTTCAAAGGTGCAGGTAACGACGAGACT TTAGCGAATGTGGTGCTGCAGGGCCTCCGGTTTCCTGAGGGCCCGCTCGTGAGCTTCCAAGCGAGGGATTTGATTCGAAGATTGCTTGTGAAGGAACCGG AGAACCGATTAGGGACGGTGAAAGGTGCTGCTGAGATCAAGCAGCATCCTTTCTTTGAAGGGCTGAACTGGGCGCTGATTCGGTGTGCGATTCCTCCCGA GCTGCCCGATTATTATGATGTTAGTGTGCAGAATTCGGGGGCCGATGAACATGGGAGTAGTGATTATTTGGAGTGTAAAGCTACTGGCGAGCATCTCGAG TTCGAGTTGTTCTGA
AA sequence Show only first row Show all	>Lus10035591 pacid=23147470 polypeptide=Lus10035591 locus=Lus10035591.g ID=Lus10035591.BGIv1.0 annot-version=v1.0 MGSYSGTSEIVEAREEDTDSVILSNKGAYRSYSGITLGDRRPLKLGDKDSLEDEINQLFEAISLKNASKGLGASNNQASTSSSPLAMRSAMKRPVAVGAS YSLCNSPRVSSSEGVSLKQALRDLCLSKASEMAAMKRMSSKPPLASPRVSEAGGKIKNMYSNSSVSVETTNKDFGKGPMVEEISKSNSSQKMLRVELPKM RSLNPSAQSSPRLQGLKFSSSQSAQSSPRLQSLKTELQNEIQLESKKGGGSHSGSNMSSSSPRLIDQEKVQNGTDTVHQTPNPIVSSAASKVGSQALNFS SKSAHSSPRLLPAVASKMPKERVTIASSIACPESPDSSPVKKAPVFTKTSRKGRLPAKPRSTKNTKHARSVKTVIRSRTSIKKKRKPSGSNSVESGSDEG IPGSVVPTPPTQLVCQKCQCSLSNARAGPVEDPMDSVVVKSEFAKKNLERGKGGEFSQSSKSSLGDYSNSTSTSNSEESNASRFSCSNRPHMSKDARWQA VRHVKTRDKGLTLAHFNLLKKLGCGDIGTVYLAELVGTNCLFAIKVMDNEFLARRKKLPRAQTEREILRMLDHPFLPTLYAHFTSDNLSCLVMEYCPGGD LHVLRQKQLGRCFPEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCNVSPTLLQSSSTTFMEPPRMSGPCTSSSCIDPFC IEPSCRVSCFTPRRMLPPSAAKARKAKADLAVHLRTLPQLVAEPTDARSNSFVGTHEYLAPEIIKGDGHGAAVDWWTFGIFLYELIYGRTPFKGAGNDET LANVVLQGLRFPEGPLVSFQARDLIRRLLVKEPENRLGTVKGAAEIKQHPFFEGLNWALIRCAIPPELPDYYDVSVQNSGADEHGSSDYLECKATGEHLE FELF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	0	1
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	1.0	0.9249
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	1.4	0.9181
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036127 [exp]	3.9	0.8882
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	7.1	0.8831
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	7.7	0.8690
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	8.7	0.9152
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	8.8	0.8902
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	9.4	0.9031
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	10.8	0.8959
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10023240 [exp]	11.3	0.8504

Compare expression of checked genes

Lus10035591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.