Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52880 667 / 0 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT5G03630 639 / 0 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G09940 554 / 0 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT3G27820 461 / 1e-160 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT1G63940 384 / 5e-130 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G17240 57 / 2e-08 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT4G28220 55 / 6e-08 NDB1 NAD(P)H dehydrogenase B1 (.1) AT1G48030 53 / 3e-07 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT5G22140 45 / 6e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008633 [exp] 622 / 0 AT3G52880 493 / 3e-174 monodehydroascorbate reductase 1 (.1.2) Lus10022260 [exp] 460 / 6e-160 AT3G27820 719 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10013079 [exp] 434 / 4e-149 AT3G27820 694 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10028763 [exp] 355 / 3e-118 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Lus10017102 [exp] 60 / 1e-09 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 60 / 1e-09 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 57 / 2e-08 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 56 / 6e-08 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10018541 [exp] 51 / 2e-06 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114800 [exp] 743 / 0 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G346200 [exp] 473 / 5e-165 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1) Potri.001G099600 [exp] 370 / 2e-124 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.008G100800 [exp] 66 / 1e-11 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 61 / 8e-10 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.015G037800 [exp] 42 / 0.0006 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.003G178200 [exp] 42 / 0.0008 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.011G044600 [exp] 42 / 0.001 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10035593 pacid=23147524 polypeptide=Lus10035593 locus=Lus10035593.g ID=Lus10035593.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAGAGCTTCAAGTATGTCATCCTCGGCGGTGGCGTTTCTGCGGGATATGCAGCGAGGCAGTTTGAAAAGCAAGGGGTCAACGCTGGTGAAC TGGCAATTATCTCAAAGGAGGCGGTAGCTCCTTATGAACGTCCAGCTCTCAGCAAGGCCTATCTCTTCCCTACAGGAACTGCAAGGCTTCCTGGGTTCCA TACCTGCGTTGGGGGTGGTGGGGATAGATTGATTCCTGAGTGGTACACCGAGAAGGGGATTGAGTTGATCCTTAACACAGAAATAGTCAAGGCTGATCTT GCTTCGAAGTCACTCGTTAGCGCTGCTGGGGACACCTTCAAGTATGAGACTTTGGTTATTGCTACTGGTTCCACCGTGTTGCGGCTGACTGACTTTGGAG TAGAAGGAGCTGATGCCAAGAACATCTTCTACTTGAGAGAAATTGACGATGCTGATAAGCTCGTTGAAGCTATTAAAGCGAAACCAAATGGAAAGGCTGT GATTGTTGGAGGAGGGTACATTGGCCTTGAGCTTAGTGCAGCTTTGAAGATCAACAATCTTGATGTTACCATGGTCTATCCTGAGCCCTGGTGCATGCCC CGCCTTTTCACAGCTGAGATAGCTGCTTTCTATGAAGGCTATTATGCCAACAAGGGAATCAAGATTATCAAGGGAACCGTTGCGGTTGGATTTACTTCTG ATTCAAACGGAGAGGTGAAGGAAGTTAAACTGAAGGATGGCACTGTGCTGGAAGGTGATATTGTAGTTGTTGGTGTTGGAGGAAGGCCACTTGCCGCCTT GTTTAAGGGGCAGGTTGAAGAAGAGAAGGGTGGAATCAAGACCGATGGATTCTTCAAAACCAGCGTCGCTGACGTATATGCTGTGGGGGATGTTGCTACT TTCCCTATGAAGATCTACAACGAGATCCGAAGAGTTGAACACGTTGACCATGCCCGTAAATCAGCTGAACAGGCAGTTAAGGCCATACTGTCGACTGAGA AAGTTGAAGAATACGATTACCTTCCGTACTTCTACTCCCGTGCCTTCGACCTGTCGTGGCAGTTCTACGGGGACAATGTGGGGGAGACAGTGCTATTCGG CAACAACGATCCAGCATCAGAGAAGCCAAAGTTCGGTACTTACTGGGTTAAGGATGGGAAGGTGGTCGGAGCGTTCCTGGAAGGTGGTTCCCCTGATGAG AACAAGGCCATCGCTAAAGTTGCCAGGATGCAGCCTGTGGTCGACAACATTGGGTTGCTAGTTCAAGAAGGTCTTGGCTTTGCCTCCTTTTACTAA
AA sequence Show only first row Show all	>Lus10035593 pacid=23147524 polypeptide=Lus10035593 locus=Lus10035593.g ID=Lus10035593.BGIv1.0 annot-version=v1.0 MAEKSFKYVILGGGVSAGYAARQFEKQGVNAGELAIISKEAVAPYERPALSKAYLFPTGTARLPGFHTCVGGGGDRLIPEWYTEKGIELILNTEIVKADL ASKSLVSAAGDTFKYETLVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKPNGKAVIVGGGYIGLELSAALKINNLDVTMVYPEPWCMP RLFTAEIAAFYEGYYANKGIKIIKGTVAVGFTSDSNGEVKEVKLKDGTVLEGDIVVVGVGGRPLAALFKGQVEEEKGGIKTDGFFKTSVADVYAVGDVAT FPMKIYNEIRRVEHVDHARKSAEQAVKAILSTEKVEEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGNNDPASEKPKFGTYWVKDGKVVGAFLEGGSPDE NKAIAKVARMQPVVDNIGLLVQEGLGFASFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	0	1
					Lus10002555 [exp]	2.6	0.9736
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	2.8	0.9713
AT5G36160			Tyrosine transaminase family p...		Lus10033659 [exp]	3.7	0.9680
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	6.3	0.9701
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	8.1	0.9712
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	8.5	0.9657
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	8.5	0.9705
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	9.9	0.9665
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	11.2	0.9670
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	11.6	0.9577

Compare expression of checked genes

Lus10035593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.