Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62420 152 / 6e-44 Protein of unknown function (DUF506) (.1) AT1G12030 150 / 3e-43 Protein of unknown function (DUF506) (.1) AT3G07350 126 / 6e-34 Protein of unknown function (DUF506) (.1) AT3G25240 116 / 2e-30 Protein of unknown function (DUF506) (.1) AT2G38820 104 / 5e-26 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G32480 99 / 8e-24 Protein of unknown function (DUF506) (.1) AT4G14620 99 / 2e-23 Protein of unknown function (DUF506) (.1) AT2G20670 92 / 2e-21 Protein of unknown function (DUF506) (.1) AT3G22970 90 / 7e-21 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G39650 89 / 3e-20 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003258 [exp] 498 / 3e-179 AT1G62420 179 / 2e-54 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 139 / 5e-39 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10002335 [exp] 133 / 5e-38 AT3G07350 177 / 7e-56 Protein of unknown function (DUF506) (.1) Lus10003087 [exp] 119 / 8e-31 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 119 / 1e-30 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 107 / 3e-26 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 105 / 2e-25 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 103 / 9e-25 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 103 / 2e-24 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G023301 [exp] 191 / 2e-58 AT1G62420 195 / 1e-60 Protein of unknown function (DUF506) (.1) Potri.004G001400 [exp] 179 / 5e-54 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.004G184700 [exp] 135 / 1e-37 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.009G144600 [exp] 135 / 2e-37 AT3G07350 271 / 1e-90 Protein of unknown function (DUF506) (.1) Potri.005G216900 [exp] 106 / 5e-26 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 104 / 3e-25 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G056100 [exp] 99 / 8e-24 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.008G159800 [exp] 99 / 3e-23 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G071500 [exp] 96 / 3e-23 AT1G77160 155 / 2e-46 Protein of unknown function (DUF506) (.1) Potri.013G129900 [exp] 97 / 7e-23 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10035594 pacid=23147617 polypeptide=Lus10035594 locus=Lus10035594.g ID=Lus10035594.BGIv1.0 annot-version=v1.0 ATGGCGAGAATCAAAGCTCCTGTAACTGCGAAACTGAACATGCTCGCCATCGCTTTCGACCAGGCTGCCATGGCGATAACCCGCCAGCAGCCCTGCGAGA GCAGCGGCAGCGAGCATTTCAACTCCGCCTCCGTTGACTCCCCAGCCGCCGTTAATCTCTCCGATCTTGTCAATTCCTTCCTAGAGCGAGACTACACTTA CAACGATGGAAAATTCCGACGCGATTTCGACGATGAGAATGGCGATGACGTCGATTCGCTTGACGCCGTGGCGTACGGAGAATCGAAATCTGAGCTGGAG AAATTGTTAAAAGGAGACGGTGACGATGATGATGAAGAGGAGAGGGAGATGATCAGGGGCGAGACAGATAGAGCTCTGCAAGCTGATGGCGGGATTGACG AGGGGTTTAAACGCCGTTTGTTGTCTCGCCTGCGTGATTCTGGATTTGACGCCGGGCTCTGCAAATCGCGGTGGGAGAAGAATGGGAGGCGGTTAGGCGG GAGATACGAGTACATTGACGTGAAGGTCAAAGTCGGAGGAGGGGTAAAACGGTACGTTGTGGAGGTGAATCTGGGGGCGGAGTTCGAGGTGGCGAGGCCG ACGGCGGAACATGCGGCGATGCTGAGCTCGATCCCGGAGGTGTACGTGGGGAAGGCGGAGGAGATGAGGAGGATTGTGAAGCTGATGTGCGGGGTAGTGA GGCAGTCGATGAAAGCGGCGGAGATGCAAGTGCCGCCGTGGAGGAGGAGCGCCTACATGGAAGCCAAGTGGTTCGGGCCTTACAAGCGGACGGTGAACGG TGCGCCGTCCAAGGCGGAGCCGATGTCCGTTCCTGGGAAACGAGAGGTCGGGTTCGGGGCGGGTTTACCAGCGATTCGGGGAGTCGGCGCCGTGGCGGGG GTCCGGCTAAGTGGTGGTATGGGGATTAATAAGGTCAGCCGTTTGACGACTGCGCTCGAGGCATAA
AA sequence Show only first row Show all	>Lus10035594 pacid=23147617 polypeptide=Lus10035594 locus=Lus10035594.g ID=Lus10035594.BGIv1.0 annot-version=v1.0 MARIKAPVTAKLNMLAIAFDQAAMAITRQQPCESSGSEHFNSASVDSPAAVNLSDLVNSFLERDYTYNDGKFRRDFDDENGDDVDSLDAVAYGESKSELE KLLKGDGDDDDEEEREMIRGETDRALQADGGIDEGFKRRLLSRLRDSGFDAGLCKSRWEKNGRRLGGRYEYIDVKVKVGGGVKRYVVEVNLGAEFEVARP TAEHAAMLSSIPEVYVGKAEEMRRIVKLMCGVVRQSMKAAEMQVPPWRRSAYMEAKWFGPYKRTVNGAPSKAEPMSVPGKREVGFGAGLPAIRGVGAVAG VRLSGGMGINKVSRLTTALEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62420			Protein of unknown function (D...		Lus10035594 [exp]	0	1
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	6.3	0.8040
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	7.6	0.8294
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	12.2	0.7774
					Lus10010742 [exp]	24.4	0.7875
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	40.2	0.7788
AT5G64230			unknown protein		Lus10010617 [exp]	50.4	0.7604
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	65.7	0.7675
AT5G03450			Transducin/WD40 repeat-like su...		Lus10042191 [exp]	79.1	0.7778
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	82.7	0.7731
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10018826 [exp]	101.7	0.7448

Compare expression of checked genes

Lus10035594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.