Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52870 546 / 0 IQ calmodulin-binding motif family protein (.1) AT3G58480 332 / 8e-108 calmodulin-binding family protein (.1) AT2G26190 326 / 4e-106 calmodulin-binding family protein (.1) AT5G57010 322 / 9e-105 calmodulin-binding family protein (.1) AT3G13600 323 / 9e-104 calmodulin-binding family protein (.1) AT4G33050 315 / 2e-102 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003257 [exp] 858 / 0 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10039178 [exp] 407 / 2e-136 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 400 / 1e-133 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 397 / 2e-133 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 395 / 1e-132 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 323 / 1e-105 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10013526 [exp] 325 / 7e-105 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10016219 [exp] 322 / 9e-104 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 313 / 1e-100 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114700 [exp] 643 / 0 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.016G034100 [exp] 418 / 1e-143 AT3G52870 367 / 3e-124 IQ calmodulin-binding motif family protein (.1) Potri.018G061901 [exp] 385 / 9e-129 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 377 / 1e-125 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 366 / 2e-121 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 331 / 4e-107 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 332 / 1e-106 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 327 / 6e-105 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 322 / 8e-104 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 305 / 7e-100 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035595 pacid=23147394 polypeptide=Lus10035595 locus=Lus10035595.g ID=Lus10035595.BGIv1.0 annot-version=v1.0 ATGCAGACACAGACGCTCTCTCCTTTCTCTTACCCTCTCGATAAGCTCGACGTCTCCGTCGGATTTCAATCTCCGGCTCAGTCGCCGGGTTCTCAGCCCC AGGTCAGCCCTACATTCGACGGTCCCGACACGCCGGACACTGTTGACCGGAAGTGTCCCGGATTCGAAATGCCGGTGGCTGAACCGGAGGTTCTCGACGG GGATAGGTCGCTGGAGGTGACCACGCCGCGAGGTAGCGGATCGGACACCGCCGCGGTGAAGTTGCAGAAGGTTTATCGGAGTTACCGGACGAGGCGTAGG TTAGCGGACTCCGCCGTGGTCGCTGAAGAGCTCTGGTGGCAAGCGATTGATTATGCGAGATTGAACCACAGCACTGTTTCTTTCTTCAATTTCTCGAAGC CGGAAACCGCTGCTTCAAGATGGAATCGTGTTAGCTTGAATGCGTCCAAGGTGGGTAAGGGTTTATCAAAAGATGCAAAAGCACAAAAGCTGGCTTTTCA ACACTGGATTGAAGCTATTGATCCGAGGCACCGATATGGACACAGCTTGCATATATATTACGAAGAGTGGTGCAAGGCTGATTCTGGGCAGCCATTCTTT TACTGGTTGGACATTGGAGATGGTAAAGAGCTTGATCTGAAGGAATGCCCTAGGTCAAACCTTCGGCAACAATGCATCAAGTACTTAGGACCTCAAGAGC GAGAGCATTATGAGTACATATTTGTTGAAGGCAAGATGACTCACAAACTGACCGGTAATCTACTTGACACAACTAAGGGAGCCAAGTGGATATTTGTCAC GAGCACCTTCGATAGACTGTATGCTGGCCAAAAAAAGAAAGGAATATTTCATCATTCAAGCTTCCTGGCTGGTGGTGCTACATTGGCAGCTGGAAGGCTG GTGGCTGAGCAAGGAATTATTAAGAGCATCTCACCATACAGTGGACATTACCGGCCAACAGAAGAAACTCTCGAAACCTTCATATCCTATCTCAAGGACA ATGGCGTCAACATGGATAATGTCCAGATAAACAAGGCCAATGAAGATTCTGATATCTACGACGAAAGCAAGCTCTCTCAAAGTGGGTTGAGTATAGACAT TCCTTGGAACACAATGATCCCCGTTCCTAATGTAGAGATTTCCACCGCAGAAGAAGTCCCCTCGGATGCCAAGCAAACCGAAAAAAAAGGTGAATACAAA AGGACCTTATCCGGTGGCCTCCAGAGTCCACGAGCGGAAGTCCCCAAGGCATCAATACTGCAAAGAATCAATTCCAAGAAAGCTGCCAAATCTTACCAAC TCGGGCATCAAGTCTCGCTCAAATGGTCGACAGGAGCTGGTCCGAGGATCGGCTGCATGGCTGATTACCCTGTTCAAGTTAGATCACAGGCCCTTGAGTT TGTTAACCTTTCTCCAAGAAGCCTACCAACTCCTCGATCCCGATTATCCTGCCTCACCTCACCTAAATCTGAACAAACATATATGCCATAG
AA sequence Show only first row Show all	>Lus10035595 pacid=23147394 polypeptide=Lus10035595 locus=Lus10035595.g ID=Lus10035595.BGIv1.0 annot-version=v1.0 MQTQTLSPFSYPLDKLDVSVGFQSPAQSPGSQPQVSPTFDGPDTPDTVDRKCPGFEMPVAEPEVLDGDRSLEVTTPRGSGSDTAAVKLQKVYRSYRTRRR LADSAVVAEELWWQAIDYARLNHSTVSFFNFSKPETAASRWNRVSLNASKVGKGLSKDAKAQKLAFQHWIEAIDPRHRYGHSLHIYYEEWCKADSGQPFF YWLDIGDGKELDLKECPRSNLRQQCIKYLGPQEREHYEYIFVEGKMTHKLTGNLLDTTKGAKWIFVTSTFDRLYAGQKKKGIFHHSSFLAGGATLAAGRL VAEQGIIKSISPYSGHYRPTEETLETFISYLKDNGVNMDNVQINKANEDSDIYDESKLSQSGLSIDIPWNTMIPVPNVEISTAEEVPSDAKQTEKKGEYK RTLSGGLQSPRAEVPKASILQRINSKKAAKSYQLGHQVSLKWSTGAGPRIGCMADYPVQVRSQALEFVNLSPRSLPTPRSRLSCLTSPKSEQTYMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	0	1
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	1.7	0.9577
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	5.9	0.9524
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	6.3	0.9414
AT5G42740			Sugar isomerase (SIS) family p...		Lus10007154 [exp]	6.4	0.9334
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	6.8	0.9398
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	7.5	0.9569
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	8.4	0.9573
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	9.2	0.9527
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	10.0	0.9557
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	10.1	0.9524

Compare expression of checked genes

Lus10035595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.