Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21510 104 / 4e-29 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT1G03430 103 / 8e-29 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G16360 103 / 9e-29 AHP4 HPT phosphotransmitter 4 (.1.2) AT3G29350 99 / 3e-27 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT5G39340 98 / 1e-26 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G80100 72 / 2e-16 AHP6 histidine phosphotransfer protein 6 (.1.2) AT4G04402 58 / 4e-11 two-component phosphorelay mediator, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003256 [exp] 293 / 8e-104 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10000926 [exp] 134 / 5e-41 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 127 / 6e-38 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10012777 [exp] 125 / 2e-37 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 121 / 4e-36 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10038280 [exp] 105 / 2e-29 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10025821 [exp] 101 / 6e-28 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10023127 [exp] 100 / 3e-27 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10011487 [exp] 100 / 8e-27 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028300 [exp] 124 / 5e-37 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 119 / 7e-35 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.016G113500 [exp] 112 / 2e-32 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.001G189900 [exp] 112 / 2e-32 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.010G027100 [exp] 110 / 1e-31 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.006G098200 [exp] 108 / 8e-31 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.006G236300 [exp] 106 / 4e-30 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2) Potri.008G197600 [exp] 106 / 7e-30 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.018G046800 [exp] 104 / 2e-29 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.003G032400 [exp] 102 / 2e-28 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10035596 pacid=23147500 polypeptide=Lus10035596 locus=Lus10035596.g ID=Lus10035596.BGIv1.0 annot-version=v1.0 ATGGCGTTACCATATTTCAAGGCACAGCTCAACAGCCTACTGCAATCCATGTTCGACCAGGGAATGCTGGACAGCCAGTTCACTCAGATTCAAGCTCTGC AAGATGACACCAACCCTACTTTCGTAGCTGAAGTCATCTCAGCTTTCTGCAACGATGCTGAGCGGATCATTATCGAACTCAACAAGTCCCTGAGTCATCA GAACGTAGACTTCTCCAAGTTGGATGCTTTTCTTCACCAGCTCAAAGGAAGTAGCTCCAGCATTGGGGCGCAGCGATTGAACGTTGCTTGTGTCGAACTC CGGCAAGCTTCTAATGACAAGAACAAGGCGAGGAGTCTACAAGCGTTGAACATTGTGACTCGAGAGTATTGCCTCGTGAGGAGCAACTTCGAGACCTTTC TTATGATCGAGAAGCGCATCTTTATGATCGAGAACGCACCGTAA
AA sequence Show only first row Show all	>Lus10035596 pacid=23147500 polypeptide=Lus10035596 locus=Lus10035596.g ID=Lus10035596.BGIv1.0 annot-version=v1.0 MALPYFKAQLNSLLQSMFDQGMLDSQFTQIQALQDDTNPTFVAEVISAFCNDAERIIIELNKSLSHQNVDFSKLDAFLHQLKGSSSSIGAQRLNVACVEL RQASNDKNKARSLQALNIVTREYCLVRSNFETFLMIEKRIFMIENAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	0	1
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	1.0	0.8326
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	5.7	0.6973
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	10.6	0.7769
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10021204 [exp]	11.9	0.6348
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	15.0	0.6889
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10019331 [exp]	21.9	0.6532
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	24.0	0.6817
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	24.7	0.7187
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	25.2	0.7206
					Lus10035529 [exp]	34.2	0.7038

Compare expression of checked genes

Lus10035596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.