Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03620 369 / 1e-121 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 291 / 1e-91 XSP1 xylem serine peptidase 1 (.1) AT5G59120 249 / 4e-76 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 247 / 3e-75 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58830 240 / 9e-73 Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 239 / 3e-72 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 239 / 4e-72 Subtilase family protein (.1) AT5G58840 236 / 4e-71 Subtilase family protein (.1) AT3G46840 233 / 5e-70 Subtilase family protein (.1) AT5G59190 226 / 2e-67 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003254 [exp] 705 / 0 AT5G03620 711 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009313 [exp] 291 / 1e-91 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1) Lus10020581 [exp] 276 / 2e-86 AT5G03620 653 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10020582 [exp] 265 / 8e-82 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004682 [exp] 252 / 5e-78 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 252 / 1e-76 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 250 / 2e-76 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10032425 [exp] 246 / 5e-76 AT5G59810 607 / 0.0 Subtilase family protein (.1) Lus10004683 [exp] 247 / 2e-75 AT5G59190 600 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114500 [exp] 424 / 3e-143 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 300 / 2e-95 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 295 / 2e-93 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.014G074500 [exp] 276 / 2e-87 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.009G038001 [exp] 251 / 1e-76 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.010G196700 [exp] 241 / 9e-74 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 240 / 2e-72 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 239 / 2e-72 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 234 / 6e-71 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.004G173900 [exp] 234 / 3e-70 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10035598 pacid=23147534 polypeptide=Lus10035598 locus=Lus10035598.g ID=Lus10035598.BGIv1.0 annot-version=v1.0 ATGTACCCACTTACTAGCGGGAGTCGAGCAGCTTTGGAACCACTTGGATATGGAAACGCAAGCGCGTGTGATTACGGGACTCTTGATGAGAAGAAAGTGA AGGGGAAGATCATCTTCTGCAGGGGAAATGCCAACCAGGACTACTACATCAGCAGGATGAATGGAACTGGAGTGATCATGACCACCACCGAGCAATCTGA ATATCCTGCCACCACCATCATCCCTGCAACAGTGATTCTTTACGACCAAGGTGAGAAGATTGACACCTACATTAACAACACCAGATACCCTAGGGCTGTC ATCTATCAGACCAGGACTGTTGATGCTAGTGGCAGTGCACCGGCTGTGGCGTCGTTCTCTTCTAGAGGGCCTCAATCTGTCAGCCCCAGTATTCTCAAGC CGGATATAGCAGCACCAGGGTTGTCTATACTAGCAGCATACTCAGAGCTCACCACACTAACAGGAGAACAATCGGACACCCGCCATTACCCATTCAACAT CATATCAGGCACTTCAATGGCGTGCCCACACGCTGCAGCAGCAGCTGCCTACGTAAAAACCTTCCACCCGGACTGGTCACCTGCAATGATCAAGTCCGCC ATTATGACAACAGCCACGCCGTTCAAAATTCCAGCAAAAGGCGAAGGACTAGCCGCAGGTTCCGGACAAATCAACCCGAGGAAGGCGGTCCACCCCGGTC TAGTCTACGACATCTCAATAAGCAACTACATCAGCTACTTGTGCAAAGAAGGATACAATGAGACTGCAATCAACCTTCTGTACCATGGTAGGAAGAACCT CACCTGTATGGATTTCAAGCCTGCTAGAGGCCATGATGGCCTCAACTACCCTTCCATGCATTTGCAGCTCAACAGCATGGATACAAACTTCTCCGCAGAG TTTTATAGGACGGTGAAGCAGGTAGGGTATGGAGACTCGGTCTACATTGCGAAGGTGACTGCACCGCAAGGGATTTCAGTACAGGTGGTGCCGGAGATGT TGATGTTCAGCAAGAAGCATCAGAAGAAGAAGTTCAAGGTCACATTGAGTGGGACATTGGCAAATGGTACGGACATTGCGACAGCTTCGTTAGTGTGGGA TGATAATTTACACACTGTTCTTAGTCCCATAGTAGTATATAAGCATTGGTATTAG
AA sequence Show only first row Show all	>Lus10035598 pacid=23147534 polypeptide=Lus10035598 locus=Lus10035598.g ID=Lus10035598.BGIv1.0 annot-version=v1.0 MYPLTSGSRAALEPLGYGNASACDYGTLDEKKVKGKIIFCRGNANQDYYISRMNGTGVIMTTTEQSEYPATTIIPATVILYDQGEKIDTYINNTRYPRAV IYQTRTVDASGSAPAVASFSSRGPQSVSPSILKPDIAAPGLSILAAYSELTTLTGEQSDTRHYPFNIISGTSMACPHAAAAAAYVKTFHPDWSPAMIKSA IMTTATPFKIPAKGEGLAAGSGQINPRKAVHPGLVYDISISNYISYLCKEGYNETAINLLYHGRKNLTCMDFKPARGHDGLNYPSMHLQLNSMDTNFSAE FYRTVKQVGYGDSVYIAKVTAPQGISVQVVPEMLMFSKKHQKKKFKVTLSGTLANGTDIATASLVWDDNLHTVLSPIVVYKHWY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03620			Subtilisin-like serine endopep...		Lus10035598 [exp]	0	1
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006384 [exp]	16.6	0.7937
					Lus10007539 [exp]	48.8	0.6578
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	58.6	0.7173
AT5G03620			Subtilisin-like serine endopep...		Lus10035599 [exp]	60.9	0.6771
AT4G00380		FDM2	factor of DNA methylation 2, X...		Lus10005463 [exp]	61.4	0.7443
					Lus10042510 [exp]	147.4	0.7097
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	174.5	0.6600
AT3G04550			unknown protein		Lus10012941 [exp]	255.0	0.6755
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014874 [exp]	263.5	0.6450

Compare expression of checked genes

Lus10035598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.