Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03620 347 / 3e-113 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 301 / 4e-96 XSP1 xylem serine peptidase 1 (.1) AT5G59120 271 / 2e-84 ATSBT4.13 subtilase 4.13 (.1) AT5G58840 267 / 3e-83 Subtilase family protein (.1) AT3G46840 261 / 1e-80 Subtilase family protein (.1) AT5G59100 261 / 1e-80 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 258 / 8e-80 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59130 256 / 6e-79 Subtilase family protein (.1.2) AT5G59190 255 / 6e-79 subtilase family protein (.1) AT3G46850 252 / 2e-77 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003254 [exp] 504 / 2e-174 AT5G03620 711 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10020582 [exp] 314 / 1e-100 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009868 [exp] 307 / 8e-99 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10020581 [exp] 305 / 8e-98 AT5G03620 653 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 304 / 6e-97 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10004683 [exp] 293 / 3e-93 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10040253 [exp] 290 / 5e-92 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009867 [exp] 299 / 1e-91 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10009313 [exp] 289 / 3e-91 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114500 [exp] 407 / 9e-137 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 315 / 9e-102 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 305 / 1e-97 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 303 / 7e-97 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.012G133200 [exp] 301 / 2e-95 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196900 [exp] 295 / 2e-93 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 274 / 1e-85 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 270 / 4e-84 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 259 / 4e-81 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G144500 [exp] 246 / 4e-75 AT5G59810 508 / 9e-170 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10035599 pacid=23147676 polypeptide=Lus10035599 locus=Lus10035599.g ID=Lus10035599.BGIv1.0 annot-version=v1.0 ATGCTGCTCTCTGCAATTCTATGTGCCTCATTCGGTGATGGGACTGTTGATCAAGAAAGAAAGCTGTACATTGTGTACATGGGAGATGCAGCTGATCCTC AAGTTCAAGGTCCACTTAGCATTTCACCCCTCGACCAGCACCACAACTTGCTCCTCGCCGCAACCAGAGACGAGTCAATTGCGAAAAGTGCAAGAATATA CAGCTACACGAGGAGCTTTAACGGGTTCGCAGCCAGACTTTTGCCGGAAGAAGTCGATAGGATACAAGGACGCGACGACGTGATTTCGGTGTTTGAGAGC CAGAAGAAGCAACTCCACACGACTCGGTCGTGGGATTTCCTGGGCATGACTGAAGATGTCACAAGGAAACCAACCCTGGAGAGCGGCATCATCATTGGTG TATTGGACACCGGAGTGTACCCGGACGCCCCAAGCTTCAACGACACAGGATACTCCCCTCCGCCACTCAAATGGAAAGGCAAATGCGATTCCGGCCCCAA CTTCACCGGCTGCAACAACAAAGTAATCGGCGCAAGATTCTACAACCTCGACAACCTAGACCCAGAGTACGACGTCCTAACCCCAGCCGACTTCGACGGC CATGGCTCCCACACTTGCCATGCCTCCCACCCTTCCTCCACCGCCGCCGGATCCCCCGTCAGTGAAGCCAGCTTGTACGGCATCGCCAAGGGAACAGCCA GGGGTGGGGTCCCTTCCGCCAGAATCGCCATGTACAAGGTCTGCTGGAGCAACGGCTGCGACGACGTCAACTTGCTGGCGGGGTTCGACGACGCCATCGC CGACGGAGTCGACATCATATCGATATCCATCGGCGGCAACGCCAAGGCGTTCCATTTGGACCCCATTGCGATCGGATCGTTCCACGCCATGAAGAAGAAG ATCCTTGTGTCCTGCTCTGGGGGGAATGTGGGACCTGCTTTGGGGACGGTTCAGAATGTAGCGCCATGGATTCTTACTGTGGCGGCTTCCAATGTTGATA GGCAGTTCAAGACCGCTGTCAAGTTGGCGAACGGGATTAAAGCCGCTGCAAGTCTTTCTACTTCTTTTATCAACTCCTCCAATAATTAG
AA sequence Show only first row Show all	>Lus10035599 pacid=23147676 polypeptide=Lus10035599 locus=Lus10035599.g ID=Lus10035599.BGIv1.0 annot-version=v1.0 MLLSAILCASFGDGTVDQERKLYIVYMGDAADPQVQGPLSISPLDQHHNLLLAATRDESIAKSARIYSYTRSFNGFAARLLPEEVDRIQGRDDVISVFES QKKQLHTTRSWDFLGMTEDVTRKPTLESGIIIGVLDTGVYPDAPSFNDTGYSPPPLKWKGKCDSGPNFTGCNNKVIGARFYNLDNLDPEYDVLTPADFDG HGSHTCHASHPSSTAAGSPVSEASLYGIAKGTARGGVPSARIAMYKVCWSNGCDDVNLLAGFDDAIADGVDIISISIGGNAKAFHLDPIAIGSFHAMKKK ILVSCSGGNVGPALGTVQNVAPWILTVAASNVDRQFKTAVKLANGIKAAASLSTSFINSSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03620			Subtilisin-like serine endopep...		Lus10035599 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	4.0	0.7611
					Lus10007539 [exp]	4.5	0.7080
AT3G09590			CAP (Cysteine-rich secretory p...		Lus10025279 [exp]	6.0	0.6754
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	7.1	0.7275
					Lus10039750 [exp]	8.7	0.7120
					Lus10005187 [exp]	13.7	0.6950
					Lus10010117 [exp]	14.7	0.6950
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	15.6	0.6950
					Lus10002152 [exp]	16.4	0.6950
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	17.2	0.6950

Compare expression of checked genes

Lus10035599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.