Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 384 / 6e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 362 / 3e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 271 / 1e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 258 / 8e-84 SGNH hydrolase-type esterase superfamily protein (.1) AT5G03590 158 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 117 / 2e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G53920 116 / 4e-29 GLIP5 GDSL-motif lipase 5 (.1) AT1G20130 115 / 4e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G75900 111 / 1e-27 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 110 / 3e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003253 [exp] 679 / 0 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 236 / 5e-75 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 219 / 3e-70 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 231 / 3e-69 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 198 / 4e-61 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 117 / 2e-29 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 114 / 1e-28 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 112 / 6e-28 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003719 [exp] 112 / 1e-27 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406500 [exp] 398 / 1e-138 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G237000 [exp] 336 / 4e-114 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 241 / 3e-77 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 241 / 5e-77 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 207 / 6e-64 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 151 / 3e-43 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 113 / 3e-28 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 110 / 8e-27 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G065100 [exp] 107 / 7e-26 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.002G018800 [exp] 107 / 7e-26 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10035600 pacid=23147346 polypeptide=Lus10035600 locus=Lus10035600.g ID=Lus10035600.BGIv1.0 annot-version=v1.0 ATGGCGAAAATCACCAACTTCTGCTTCCTCCTTCTCCTCTTCTCCTCCTTCCTGTTTCTCCTCTCAGTGAGTGCAGCGGAGGAGGGTTACGGGCAGCGCC ACCTCTTCAGGTTCAAGCCCAGCAAGCTGTTCGTCTTCGGAGACTCCTACGCCGACACCGGCAACGTCCGCAAAGCCTTAGCCACCTCCTGGAAACTTCC CTACGGTATCACCTTCCCTGGCAGACCAGCCGGCCGTTTCTCCGACGGCCGCGTCCTCACCGATTTCCTTGCAAGGTTCATTGGGGTGAAGTCACCGATC CCATACAAATGGAGGAAAGTTGGCCCGAAATCAGTGAGGTACGGCATGAACTTCGCCTTCGGAGGCACCGGAGTGTTCAACACCCTTAGCCCCGAACCCA ACATGACCACCCAGATTGACCTTCTCCAACAAATGCTCACTCAAAAGACCTACTCCACCTTTGACCTCCACAACTCCGTCGCCCTCGTCTCTGTTGCCGG CAACGACTACAGCACTTACCTCTCCACTAACGGCTCCCTCGAGGATCTGCCAGCGTTCATATCACAAGTGGTGAACCAAACAACCAAAAACCTCCTCCGA ATCCAAGGCATGGGAATCAAGAAAGTAGTGGTCACCGGACTCCCTCCACTGGGTTGCCTCCCAGCAACGACGTCGTTCAACATGTTCCAGCAATGCAACG ACAGCCAGAACCAGCTGGTCACACTCCACAACTTCCTCCTCCGACAATCCATCGCCGACCTGAACCCCAACAACAACGACACGAAGTTCATGTTGCTCGA CATGTTCCAGGCGTTCATGACCATCCTGGACCAAAAGCCAGCGAAAGAACAAACCACTACTACTAGTAGTAGTAGCAGTAGTAGTAGTGGTAAGGGGAAG TTATTGTGGAACCCGTTGAAGCCGTGCTGCCAAGGCATGAGCGCGGGGGAAGGGTGCGGGAGCGTGGACGAGAGCACGGGAGGGAAGAGGTACACGGTTT GCGAGGATCCCAAGGCGGCGTTCTTCTGGGATTCTGTTCATCCTACTCAGGAAGGGTGGAGGGCTGTTACTTTTGCTCTTAAGTCTAATCTTCTTTCTGG TTTGATGATTTAG
AA sequence Show only first row Show all	>Lus10035600 pacid=23147346 polypeptide=Lus10035600 locus=Lus10035600.g ID=Lus10035600.BGIv1.0 annot-version=v1.0 MAKITNFCFLLLLFSSFLFLLSVSAAEEGYGQRHLFRFKPSKLFVFGDSYADTGNVRKALATSWKLPYGITFPGRPAGRFSDGRVLTDFLARFIGVKSPI PYKWRKVGPKSVRYGMNFAFGGTGVFNTLSPEPNMTTQIDLLQQMLTQKTYSTFDLHNSVALVSVAGNDYSTYLSTNGSLEDLPAFISQVVNQTTKNLLR IQGMGIKKVVVTGLPPLGCLPATTSFNMFQQCNDSQNQLVTLHNFLLRQSIADLNPNNNDTKFMLLDMFQAFMTILDQKPAKEQTTTTSSSSSSSSGKGK LLWNPLKPCCQGMSAGEGCGSVDESTGGKRYTVCEDPKAAFFWDSVHPTQEGWRAVTFALKSNLLSGLMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	0	1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	3.0	0.8963
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	4.7	0.8945
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	6.7	0.8667
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	7.1	0.8543
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	8.0	0.8646
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10017336 [exp]	9.9	0.8004
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	10.4	0.8255
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	15.0	0.8389
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	16.0	0.8381
AT2G39870			unknown protein		Lus10040247 [exp]	17.0	0.8390

Compare expression of checked genes

Lus10035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.