Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36310 537 / 0 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT1G05620 334 / 1e-105 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) AT3G10070 180 / 5e-48 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) AT1G17440 115 / 5e-26 CKH1, TAF12b, EER4 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) AT5G18890 45 / 0.0003 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003251 [exp] 662 / 0 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10003250 [exp] 610 / 0 AT3G10070 325 / 8e-105 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) Lus10042608 [exp] 343 / 6e-109 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10022062 [exp] 334 / 1e-105 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10006528 [exp] 127 / 2e-30 AT1G17440 280 / 4e-86 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Lus10003252 [exp] 117 / 2e-30 ND / Lus10020538 [exp] 122 / 1e-28 AT2G04810 46 / 5e-05 Protein of unknown function (DUF295) (.1) Lus10011573 [exp] 88 / 9e-18 ND / Lus10019251 [exp] 66 / 7e-11 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083400 [exp] 563 / 0 AT2G36310 534 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Potri.007G144600 [exp] 339 / 1e-107 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Potri.006G083500 [exp] 306 / 4e-93 AT3G10070 298 / 3e-95 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) Potri.001G169900 [exp] 128 / 2e-30 AT1G17440 267 / 2e-80 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.003G064100 [exp] 123 / 9e-29 AT1G17440 266 / 1e-79 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.008G197500 [exp] 53 / 1e-06 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197400 [exp] 49 / 3e-05 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295) PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase CL0012 [flax] [poplar] Histone PF03847 [flax] [poplar] TFIID_20kDa Transcription initiation factor TFIID subunit A
Representative CDS sequence Show only first row Show all	>Lus10035601 pacid=23147581 polypeptide=Lus10035601 locus=Lus10035601.g ID=Lus10035601.BGIv1.0 annot-version=v1.0 ATGGAGCTTGCTGTCCATGGTAAAGATTGTTGGGCTTGGGTTGACAAAAAGCCCACCGATAAGTTGGTGAGAAAGTACAAATTCATCCCTCTGATTTTAG TTTTTAGCCACATTTCCCTCCACAAAAAACAAAGCATCATCTTCATGGAGCAGCTAAACCCCGCCACTCCTTCAACCGTACCGCCTCCTGCGACACCCGC CGCCGTTTCTCAACCCACTGATCCCTCGCCGGTCCGACCTCCGCCGCAGCAGTCACAAATTCCGGTCAATATTCAACAACAACATCTGCCGCAGCCGCAG CAGCAATCAGCCGCACAACCATCATCCATCTCAGCTCCGGCTCCCCCTCCCGCTACCACTCCCACTCCGAACCCTAACCCTAATCCGAACCCCAATCCAC TCCCGAGACCATCAACTCCGCTGGTTCAGCCTCAATCTCAGTCCACTACTGTCACATCTACCGCTCCTAGGCCCCACAGCCACAGGCCATTGCAACATCC TCACCCCCACACTCACTTCCAGCATTTTTCTTCTCCTTCGCCTCCTACTCCGGTTCCTTCTCTGTCGTCAGCCTCCTCGGCTCCGCTCTCTACCCAGCAA CAGAGAGGCGTCGTCGCAATTGGGATCCCAGCCCCTCATCCTAGCACTTTTACTCAACCTTTTGGGGGATTGAATCGTGGTCCTGTCAATGTGCCTGAAT CAGCTGCTAATTCCAGTGCTCCTCAGGTAAGACATGGAATGCAGGGAATTCAGGGGGTTGGGGTGATGAGTTCAATTGGTTCGAGCCCTCAACTGAGGCC CGGTGGAATTCCTGCTCATCAACAACAGAGACCGTTTCAGTCTTCTATTAGGCCACCTGCTTCAAGTACCCAGGCCCCAAATACCCAGAATTTCCAAGGA CATAGCTTCATGAGGCCATCAGGTGGTCTTACAGGCTCCTCAGCACCGAACACGTCACAAGGTATGCTGCCTTCCAATCAGCCATGGCTGTCTTCTGGAG CTCAGGGAAAGCCTCCAATTCCCACCCCTTCATATAGAGCACAAATAAGCACCCAGTCCTTGCAACAAAGACCACATGTTCTTCAACATAATTCTGTGCT GCCAAATACTCCTCAGCAACACACACCCACTGCACAAGCCCCACAATCTTTAACAACCCAAGCTGCTGGGGAGCAGCATGGACAGCAAGTTCCTTCATCA AGGGTGACACAACCTGTTCCCCATCCGCAGCAAACTCCAAGGGTTCCAGCTTCAATCAACCAGAAGCAGGCTTTACAGGGAGTGCAGCAGCCAGCTGCGC TGCAGACCATTGATCCTTCAGAGAGATTGGATCCTGATGTTGAAGATATTCTTGCTGATATAGCTGACGAATTTGTTGAGTCCATCACAACTTTTGGTTG CTCTTTAGCCAAACATCGCAAGTCTGATACATTGGAAGCAAAGGATATTCTTCTACATCTGGAAAAGAATTGGAACATAACACTTCCTGGTTTTAGTGGT GATGAGATCAAGACGTTTAGAAAACCGCCGACAAATGATGTCCACAAGGAGAGGCTCGCAGCGATAAGGAAGTCAGTATTGGTATCAGAGACAGGTACTG GTAGGAATGTTGGACAAGCTCCTGGAAGTGGGAAGAGCAATCTGACAAAGACTCCTGTGATTCCCATGATTGGGGTGGCCCAGCTCCTCAATTTCACCTT AATCATCATCATCATCCTCATCGACGTCGCAGCCGCGGTTACTTCGTCGTCGCGGTTGCCGTTGTCTCCCCCTCGCCGGTCCAGCCAGTTGTTAAAGCAA TTTCTTCACGTTTCTCTGATTCTCGTTCCGGTTTCTGGTCTGAGATCCCCAAGAATTGATCACGGAATGGCGCAAGCCAATGGTGTAGTTCCCGACGGCC TATTTGCTTCTTCTGCTAAGCCTGGGAAGCTTATTATCGATACAGACCCTGGGATCGATGATAGCATGGCAATTTTAATGGCATTTCAAACTCCTGAAGT GGAAATCTTAGGCTTCACAACAGTATTTGGTAATGTTGCCACAGAAGATGCCACTCGTAATGCTTTGCTTCTGTGTGAGATTGCTGGGCGTCCTGATATT CCAGTTGCAGAGGGCTCTCATGAACCTCTAAAGGGAGGGAAGCCCCGTGTTGCTGACTTTGTCCATGGCTCTGATGGTCTGGGAAACACATACTTGTCTC CACCAAACGCAGAGAAAAGTCCAAAGACTGCTGCTGAATTTTTAGTTGACAAGGTGTTAGAGTTCCCTGGTGAAGTATCCGTTCTTGCACTTGGGCCATT GACAAATGTGGCCTTGGCAATCAAAAGGGACTCCTCATTTGCAAGCAAAGTAAAAAAGATTGTAGTTCTTGGCGGAGCCTTCTTTGCTTTGGGAAATGTT AACCCTGCTGCTGAAGCAAATATTTATGGAGATCCAGAAGCAGCAGATGTCGTGTTTACATCTGGAGCAGACATTGTTGTCGTGGGGATAAATATTACAA CTCAAGTAAAACTAACGGATGCTGACCTTCTTCAGTTGAGGCAGTCGAAAGGGAAGTATGCTCAAGTAATATGCAATATGTGCAAGTTCTACAGAGATTG GCATGTAAAGTCTGACGGAGTCCACGGCATTTTTCTTCATGATCCGGTGAGCTTCGTGGCAGTCGTTCGGCCTGATCTGTTCACATACAGGAAGGGAGTT GTGAGGGTGGAGACTCAGGGAATCTGTGTAGGGCACACCCTAATGGACCAAGGGCTCAAAAACTGGAATTCAAGCAACCCTTGGTCTGGATACTCGCCGG TGGCAGTTGCGTGGACAGTCGACGTGGACAAAGTTCTTGCATATGTGTATAAGCTAGTCGGTGTTACAAACGGACAAGACGCTTCTAATTGCTGGACAGA AGTTAAGAGTTTGGATGGACATGCTGCCTTCCTCGGAACCCATCAGTGCTTTTGCGTCCCAGTGAAAAATAACGGAGTGAATATCAGGGGCGACCATGTT TACTATTTAAACAACAACTGCGGCCAGTGTGAATTGCACCACGTCGATGATGTTATGATGACTATTGGTATGGCCGTGGTCTGTCTTGATTGTGGCGTCT TCAGTCTTGAAGATGCAAAGCTGGTTGAGCAGTCTCGTCATCCCGCCAAGAATTATCAAGACTATACTTGGTTTCTCCCTATGCCATGGGACATTCATAA GCAACCGAATAAGAAAAAGAAGAACAACAAGAAGAAGCCTAGGAAATCAAAGAAGCACCACGAGATCGATGACAACGGTTTCAAACAACGTTCTTCGTCC AAGGTGATCACCGACTAG
AA sequence Show only first row Show all	>Lus10035601 pacid=23147581 polypeptide=Lus10035601 locus=Lus10035601.g ID=Lus10035601.BGIv1.0 annot-version=v1.0 MELAVHGKDCWAWVDKKPTDKLVRKYKFIPLILVFSHISLHKKQSIIFMEQLNPATPSTVPPPATPAAVSQPTDPSPVRPPPQQSQIPVNIQQQHLPQPQ QQSAAQPSSISAPAPPPATTPTPNPNPNPNPNPLPRPSTPLVQPQSQSTTVTSTAPRPHSHRPLQHPHPHTHFQHFSSPSPPTPVPSLSSASSAPLSTQQ QRGVVAIGIPAPHPSTFTQPFGGLNRGPVNVPESAANSSAPQVRHGMQGIQGVGVMSSIGSSPQLRPGGIPAHQQQRPFQSSIRPPASSTQAPNTQNFQG HSFMRPSGGLTGSSAPNTSQGMLPSNQPWLSSGAQGKPPIPTPSYRAQISTQSLQQRPHVLQHNSVLPNTPQQHTPTAQAPQSLTTQAAGEQHGQQVPSS RVTQPVPHPQQTPRVPASINQKQALQGVQQPAALQTIDPSERLDPDVEDILADIADEFVESITTFGCSLAKHRKSDTLEAKDILLHLEKNWNITLPGFSG DEIKTFRKPPTNDVHKERLAAIRKSVLVSETGTGRNVGQAPGSGKSNLTKTPVIPMIGVAQLLNFTLIIIIILIDVAAAVTSSSRLPLSPPRRSSQLLKQ FLHVSLILVPVSGLRSPRIDHGMAQANGVVPDGLFASSAKPGKLIIDTDPGIDDSMAILMAFQTPEVEILGFTTVFGNVATEDATRNALLLCEIAGRPDI PVAEGSHEPLKGGKPRVADFVHGSDGLGNTYLSPPNAEKSPKTAAEFLVDKVLEFPGEVSVLALGPLTNVALAIKRDSSFASKVKKIVVLGGAFFALGNV NPAAEANIYGDPEAADVVFTSGADIVVVGINITTQVKLTDADLLQLRQSKGKYAQVICNMCKFYRDWHVKSDGVHGIFLHDPVSFVAVVRPDLFTYRKGV VRVETQGICVGHTLMDQGLKNWNSSNPWSGYSPVAVAWTVDVDKVLAYVYKLVGVTNGQDASNCWTEVKSLDGHAAFLGTHQCFCVPVKNNGVNIRGDHV YYLNNNCGQCELHHVDDVMMTIGMAVVCLDCGVFSLEDAKLVEQSRHPAKNYQDYTWFLPMPWDIHKQPNKKKKNNKKKPRKSKKHHEIDDNGFKQRSSS KVITD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10035601 [exp]	0	1
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	1.0	0.9036
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	1.4	0.8907
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	8.1	0.8756
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	9.2	0.8746
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	14.5	0.8696
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	16.2	0.8286
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	19.2	0.8587
					Lus10030905 [exp]	21.9	0.8545
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	24.2	0.8516
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	24.5	0.7954

Compare expression of checked genes

Lus10035601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.