Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36320 147 / 4e-46 A20/AN1-like zinc finger family protein (.1) AT3G52800 117 / 3e-34 A20/AN1-like zinc finger family protein (.1) AT4G22820 114 / 6e-33 A20/AN1-like zinc finger family protein (.1.2) AT2G27580 112 / 3e-32 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 109 / 3e-31 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT1G12440 108 / 4e-31 A20/AN1-like zinc finger family protein (.1.2) AT1G51200 96 / 5e-26 A20/AN1-like zinc finger family protein (.1.2.3.4) AT3G12630 92 / 2e-24 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT4G25380 84 / 1e-21 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT4G14225 67 / 5e-15 A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003246 [exp] 217 / 7e-74 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10007015 [exp] 115 / 2e-33 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10006671 [exp] 114 / 6e-33 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10028903 [exp] 109 / 4e-31 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 108 / 7e-31 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 107 / 4e-30 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10031262 [exp] 100 / 2e-27 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10020594 [exp] 97 / 4e-26 AT2G36320 149 / 2e-46 A20/AN1-like zinc finger family protein (.1) Lus10015697 [exp] 89 / 6e-23 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G144100 [exp] 111 / 3e-32 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.004G184300 [exp] 110 / 9e-32 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.006G056500 [exp] 110 / 1e-31 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.016G051700 [exp] 107 / 3e-30 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G018600 [exp] 105 / 1e-29 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G205500 [exp] 105 / 1e-29 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G115000 [exp] 102 / 2e-28 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 100 / 2e-27 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.012G130000 [exp] 96 / 2e-26 AT4G22820 121 / 1e-35 A20/AN1-like zinc finger family protein (.1.2) Potri.007G078500 [exp] 96 / 5e-26 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10035603 pacid=23147597 polypeptide=Lus10035603 locus=Lus10035603.g ID=Lus10035603.BGIv1.0 annot-version=v1.0 ATGGATCTCTGTTCAAAGTGCTATGGAGATTATTGCATCAAGGAGCAACAGCAAGCCTCAATCAAAGCCTCTCTTTCTCCACCTTCCCCGTCATCTTCTT CATCGGCCGTCAATATTTCTCAGCCGCTTCCCCCTTCCTTCGACTTACCGTCCGAGGTCCGGCCAGCGGCTATGGTGGATGGCCCTGCGGCGCCGCAGCA GCCAAATCGATGCTCCACGTGCAGGAAGCGGGTCGGACTGACCGGGTTCAAGTGCAGGTGCGGGATCACCTTCTGTGGGGTCCACAGGTACCCTGAGAAA CACAGCTGCGACTTCGATTTCAAGAAGGTAGGGAGGGAGGAGATCGCGAGGGCCAATCCTCTAGTCATCGCTCAGAAGCTGGACAAGATATGA
AA sequence Show only first row Show all	>Lus10035603 pacid=23147597 polypeptide=Lus10035603 locus=Lus10035603.g ID=Lus10035603.BGIv1.0 annot-version=v1.0 MDLCSKCYGDYCIKEQQQASIKASLSPPSPSSSSSAVNISQPLPPSFDLPSEVRPAAMVDGPAAPQQPNRCSTCRKRVGLTGFKCRCGITFCGVHRYPEK HSCDFDFKKVGREEIARANPLVIAQKLDKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	0	1
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	2.4	0.8567
AT1G76200			unknown protein		Lus10034571 [exp]	3.7	0.8406
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10026615 [exp]	5.7	0.8094
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	5.7	0.8406
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	7.7	0.8159
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	11.3	0.8310
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	11.7	0.8134
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10040844 [exp]	15.0	0.7753
AT2G25670			unknown protein		Lus10033084 [exp]	16.6	0.8024
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	17.7	0.7642

Compare expression of checked genes

Lus10035603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.