Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01950 1032 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 948 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 677 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 420 / 1e-131 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 386 / 2e-118 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 359 / 2e-108 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 306 / 6e-89 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 275 / 1e-78 Leucine-rich repeat protein kinase family protein (.1) AT3G24790 242 / 1e-71 Protein kinase superfamily protein (.1) AT1G61860 239 / 3e-70 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003244 [exp] 1569 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 951 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 944 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 679 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 582 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 306 / 7e-94 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 315 / 4e-92 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 272 / 5e-82 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10021632 [exp] 255 / 2e-71 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111100 [exp] 1168 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 1137 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 1091 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 958 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 952 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 947 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 916 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 409 / 4e-127 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 315 / 3e-92 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 312 / 2e-91 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035605 pacid=23147386 polypeptide=Lus10035605 locus=Lus10035605.g ID=Lus10035605.BGIv1.0 annot-version=v1.0 ATGTTGAGAAAATCAGCCAGGACATGTGTTTTCGTGGCTACTTGGTGTTGCCTGCTCCTTGTCGCAATTGGAGATGTCACTCATCCCTCTGAAGTGAGTG CTTTACTCGCCGTAAAGAAGAAGTTGATTGATCCCATGGGACACCTGGAGGATTGGAATAAGGGTGATCCTTGTAAATCCAACTGGACTGGTGTCTCTTG CTTTTACACCAACGAAACTGATGGATATCTTCATGTTAGAGAGCTTCAGCTTCTGAACATGAATCTCTCCGGTTCTTTGGCACCTGAGCTTGGTCTGCTC TCTGGTCTCCAGATTCTGGATTTCATGTGGAATCAGTTGACTGGTAATATACCCAAAGAGATTGGAAAGCTGTCATCTTTGAAACTCCTGCTCTTGAATG GGAACAAACTCTCAGGTTCTCTGCCTGCTGAGCTTGGATCTTTGTCCAGACTAAACAGACTCCAAGTTGATGAGAATGAGATCTCAGGTCCTATACCAAA ATCATTTGCTAACATGAGCAGTGTCAGACACCTCCACATGAACAACAACTCATTCAGTGGTCAAATCCCATCTGAGCTTTCCCAGTTACCATCACTCTTA CACGTGCTGTTGGATAACAACAACTTATCAGGATATCTTCCACCAGAACTATCGAAATTGCCAGCCTTACGTATACTTCAGCTTGACAACAACCACTTCA ATGGAACTCAGATCCCAGTTACCTACAGCAGCTTCTCAAGCCTACTGAAATTAAGTCTTAGAAATTGCGGCCTCCAGGGAGTTATTCCCGATTTGAGCAA CCTAACAAGCCTGATGTATTTGGATCTGAGCTGGAATAGCCTTTCTGGACCTTTACCAGCAAAACTCTCTGATAACATGAGAGCTATTGATATGTCCAAC AACAACCTTAATGGAACAATACCTGGAAGTTACTCGAATCTGAAGTCGCTTCAGGCATTGTCAGTTGAAAATAATAGGTTGACTGGTTCCGTTCCAATAA CAATCTGGAAGAATATCTCCTGGGATTCAACTACTAGACTAGAGCTCGATCTCAGGAAGAATCTTCTCTCAAGCATTCAAGGAGAACTGAATCCACCAAA TAATGTGACCCTAAGGCTCCTAGGTAATCCCATCTGCGAGAACGCTAATATAGCAAACATTGGCAAATTTTGTGGTTCTGTGGGGATGGAAGGTTGGACC AGTACTGAAAAGTCAACGAATTCTGCTGTTAGCTGTCCAGTCCAAGCATGCCCCACAGATGATTTCTTTGAATATGTCCCGGAATCACCTTTGCTATGTT TTTGTGCATCCCCACTTAGAATCGGCTACAGACTTAAGAGCCCAAGTTTCTCATACTTCCCTCCGTTACTTGTTGAATTCGAGACCTATATAACGTCTAC TCTGGGGTTGGAACTGTACGAGCTATTCATCGATGCATATGCCTGGGAACAAGGTCCTCGTTTAAGAATGGATCTGAAGCTGTTTCCTGCATGGGATAAT GTTACCCACTCGAGCACGTTTAATTTATCAGAAGTTCAACGAATAAGAGGTAGATTCACATCGTGGCGTTTCCCTGGAAGTGATCTGTTTGGACCGTATG AGCTGCTTAATTTCACTCTGGTTGGACCTTATTCACAGATGAACTTGGAAGACCAAAGGAGCAATATGAACAAGGGAGTTGTAGCAGCCATAATAGTAGG TGCTATTGCCTGTGTGGTTGGACTTATTGCAATCGCAGGGCTCCTAGTTGCAAGAAGAAATGCTAGATTCCGTCACAAGCTCTCGAGAAGACGTTTATCG TCGAAGGCATCTATGTCAATAGAAGGGGTGAGAGCGTTTAGTTTCAAAGAAATGACCGTGGCTACTGATAATTTCAGCAGCTCAAGTGAAATTGGTCGAG GTGGGTATGGGAAGGTCTACAAAGGCATTTTAGCAGACCAAACATTGGTGGCCATAAAACGTGCTGAAGAAGGATCATTACAAGGACAGAAGGAATTTCT GACAGAGATCAAGTTGTTGTCAAGGCTGCACCATAGGAATCTTGTATCGTTGATCGGGTACTGTGACGAGGAAGGGGAGCAGATGCTGGTGTACGAGTTC ATGCCCAGTGGCACACTGCGTGACTGGCTTTCTGGTAAAAGCAAGGAGAAAATACTGAACTTTGGAAGGAGGGTAAGCTTAGCACTCGGTTCAGCGAAGG GGATACTGTACCTACACAGGGAAGCAAATCCTCCAGTATTCCACAGGGACATAAAGGCAACCAACATCCTTCTGGACTCGAAGCTGATAGCTAAAGTAGC AGACTTTGGCCTGTCAAGGCTGGCTCCAGTAATGGGTGAAGATGAGGAAGCTGCAGGGAACCCAGCCAATTTTGTTTCCACTGTAGTCAGGGGCACCCCG GGATACCTGGACCCGGAGTACATGCTAACGCACCAGCTAACAGACAAGAGCGACGTGTACAGCTTGGGGATAGTGTTACTCGAGCTGCTGACAGGGATGC AACCGATAACACACGGGAAGAACATAGCGAGGGAAGTGAAGATGGCTTACAGCGGAGGGATGATGTTCTCAATAATAGACAGCAGGATGGGATCATACCC TTCGGAGTGCGTGGAGAAGCTGGTCAGTCTTGCGCTGAGGTGCTGTCAGGAGAAGCCAGAGAAGAGGCCTCCGGTTTCCGAAGTGGTTAGGGAGCTTGAG GTTATTGTGAAGATGATGCCTCCTGATGATCAGGCTGCAGCTGCACTTGTAGCTATGTATGATGATGCTGATGAGGTGGCAGGAGTAGGATTGTCAAGTA GTAAAGCTGAGGAGGGTTCGTCAACATCAACATCAACAGCAGGATTTGCGCCGTCATCGTTTTACACCAGCAGTACTAGCGATGGAAGAAGCAGGAGTTT GAAGAGTGTAGTGTCTGGGAGTGATTTGATGAGTGGAGTTGCTCCTACTATTTCGCCTCGCTAG
AA sequence Show only first row Show all	>Lus10035605 pacid=23147386 polypeptide=Lus10035605 locus=Lus10035605.g ID=Lus10035605.BGIv1.0 annot-version=v1.0 MLRKSARTCVFVATWCCLLLVAIGDVTHPSEVSALLAVKKKLIDPMGHLEDWNKGDPCKSNWTGVSCFYTNETDGYLHVRELQLLNMNLSGSLAPELGLL SGLQILDFMWNQLTGNIPKEIGKLSSLKLLLLNGNKLSGSLPAELGSLSRLNRLQVDENEISGPIPKSFANMSSVRHLHMNNNSFSGQIPSELSQLPSLL HVLLDNNNLSGYLPPELSKLPALRILQLDNNHFNGTQIPVTYSSFSSLLKLSLRNCGLQGVIPDLSNLTSLMYLDLSWNSLSGPLPAKLSDNMRAIDMSN NNLNGTIPGSYSNLKSLQALSVENNRLTGSVPITIWKNISWDSTTRLELDLRKNLLSSIQGELNPPNNVTLRLLGNPICENANIANIGKFCGSVGMEGWT STEKSTNSAVSCPVQACPTDDFFEYVPESPLLCFCASPLRIGYRLKSPSFSYFPPLLVEFETYITSTLGLELYELFIDAYAWEQGPRLRMDLKLFPAWDN VTHSSTFNLSEVQRIRGRFTSWRFPGSDLFGPYELLNFTLVGPYSQMNLEDQRSNMNKGVVAAIIVGAIACVVGLIAIAGLLVARRNARFRHKLSRRRLS SKASMSIEGVRAFSFKEMTVATDNFSSSSEIGRGGYGKVYKGILADQTLVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEF MPSGTLRDWLSGKSKEKILNFGRRVSLALGSAKGILYLHREANPPVFHRDIKATNILLDSKLIAKVADFGLSRLAPVMGEDEEAAGNPANFVSTVVRGTP GYLDPEYMLTHQLTDKSDVYSLGIVLLELLTGMQPITHGKNIAREVKMAYSGGMMFSIIDSRMGSYPSECVEKLVSLALRCCQEKPEKRPPVSEVVRELE VIVKMMPPDDQAAAALVAMYDDADEVAGVGLSSSKAEEGSSTSTSTAGFAPSSFYTSSTSDGRSRSLKSVVSGSDLMSGVAPTISPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	0	1
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	1.0	0.9697
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	1.4	0.9627
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	2.6	0.9314
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10018857 [exp]	3.0	0.9375
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	4.0	0.9372
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	7.7	0.9192
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	8.4	0.9323
AT1G60160			Potassium transporter family p...		Lus10012993 [exp]	15.8	0.9047
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10014127 [exp]	16.9	0.8948
AT1G67623			F-box family protein (.1)		Lus10037978 [exp]	17.3	0.9023

Compare expression of checked genes

Lus10035605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.