Plant FIBer expression Database

Lus10035606 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08650 644 / 0 ZIP metal ion transporter family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003243
[exp]
790 / 0 AT3G08650 842 / 0.0 ZIP metal ion transporter family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G111200
[exp]
686 / 0 AT3G08650 679 / 0.0 ZIP metal ion transporter family (.1.2)
Potri.016G140500
[exp]
314 / 9e-101 AT3G08650 334 / 4e-108 ZIP metal ion transporter family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF02535 Zip ZIP Zinc transporter
Representative CDS sequence
>Lus10035606 pacid=23147586 polypeptide=Lus10035606 locus=Lus10035606.g ID=Lus10035606.BGIv1.0 annot-version=v1.0
ATGGCGCCGGCACCACTACCCATGACGAGGATTTTGACCCATCGTCAACAACCAACCACAACAACAATCGGGTCTAAATTTCCAAACAACAATCGGGTCT
CAATTTCCACCGTTGCACTGTTTACCTTAGCCATGGCTGCGGCCACTGGTTTGGGTGCTCTCCCCTTCTTCTTCGTCGAGCTCGACCCTCAATGGGCTGG
CTTGTGCAACGGCATGGCCGCTGGTGTCATGCTTGCTGCTAGCTTTGACCTCGTTCAGGAAGGACAGGCCCACGGCGGTGGAAGCTGGGTCATGATTGGA
ATCCTCTCTGGTGGCCTCTTCATTTTGCTCTGTAAGAAGTTCCTTGAACAATACGGAGAAGTTAGCATGTTGGATATCAAAGGTGCTGATGCAACTAAAG
TAGTCCTTGTCATTGGCATTATGACTCTTCACTCCTTTGGAGAAGGCTCTGGAGTTGGGGTATCCTTTGCTGGCTCCAAAGGTTTCTCGCAAGGCCTTCT
GGTCACTCTTGCCATTGCTGTCCACAACATACCCGAGGGATTGGCTGTCAGTATGGTGCTTGCTTCTCGCGGTGTTTCTCCTCAGAATGCAATGCTCTGG
AGTGTCATCACTTCCTTGCCTCAGCCACTTGTAGCGGTTCCTTCATTCATGTGTGCGGATGCCTTCAACAAGTTTCTACCTTTTTGCACTGGTTTCGCTG
CTGGATGTATGATCTGGATGGTTGTAGCTGAGGTCCTTCCAGATGCCTTCAAGGAAGCTTCTCCCTCCCATGTGGCATCAGCAGCAACAGTTTCAGTTGC
ATTGATGGAAGCGTTCAGTACTTTCTTCCAGAGTTTCAGCCATACCTATAACTCAGAGGACGCTTCTGGTTTCTTTGTCTCATTACTTTTCGGTCTTGGT
CCACTGCTTGGTGGCATAATTCTCGTCGCATTTGCTCTTGCATTCCGTCTCCAACATGCACTCCTTATGGGCTCAGCATCCGGAATTGCTTTTGTGCTTG
CTTCCTGGCGACCATTACAGCTACTCGCTTCCTCAAAAATGGGATTTATACCCCTCACATTCTTACTAGCGACAGGAGCAGCATTTGTTCATTCTTTAGG
CTCCATCACTTTGGGTTTAGGGGGTCGAAAGAAAGCATCAGCGAATAACTTGCCAGCCGTTTCTGGGTTCCCCGTGAGCGTTCATACTCTTCAGTCATTT
CTATCATGTGGAGCAATCGGGTTGCATGCATTGGCAGAGGGACTCGCACTCGGAGTCGCTGCGCCAAAAGCTTATGGGCTCGGTCGGCACATGGTTCTTC
CGGTTTCCCTGCACGGTCTCCCGAGAGGTGCAGCTGTCGCAAGTTGCATCTTAGGTGCTACCGACAGTTGGCACAGCGGACTAGCAGCAGCTGCTTTGAT
TGGGTTTGTCGGTCCAATGTCAGCAATTGGATCGATACTAGCAGGAATTGACTATAGCGGTCTGGATCATGTGATGGTGTTTGCCTGTGGAGGATTGCTG
CCAAGTTTTTGGAGGATAGTAACGAGAGCTGTTAGGTTGGATACGAAGAAAACAGGCTTTGGGGTGGCAGCCGGAGTTGGGTTTGCTATACTTTGTTTGA
CATGTACTAAACTCGTCTGCCTGCACACTCCTTACTGCAATTCAGCTCCAGAAGCAGTGAGGTGA
AA sequence
>Lus10035606 pacid=23147586 polypeptide=Lus10035606 locus=Lus10035606.g ID=Lus10035606.BGIv1.0 annot-version=v1.0
MAPAPLPMTRILTHRQQPTTTTIGSKFPNNNRVSISTVALFTLAMAAATGLGALPFFFVELDPQWAGLCNGMAAGVMLAASFDLVQEGQAHGGGSWVMIG
ILSGGLFILLCKKFLEQYGEVSMLDIKGADATKVVLVIGIMTLHSFGEGSGVGVSFAGSKGFSQGLLVTLAIAVHNIPEGLAVSMVLASRGVSPQNAMLW
SVITSLPQPLVAVPSFMCADAFNKFLPFCTGFAAGCMIWMVVAEVLPDAFKEASPSHVASAATVSVALMEAFSTFFQSFSHTYNSEDASGFFVSLLFGLG
PLLGGIILVAFALAFRLQHALLMGSASGIAFVLASWRPLQLLASSKMGFIPLTFLLATGAAFVHSLGSITLGLGGRKKASANNLPAVSGFPVSVHTLQSF
LSCGAIGLHALAEGLALGVAAPKAYGLGRHMVLPVSLHGLPRGAAVASCILGATDSWHSGLAAAALIGFVGPMSAIGSILAGIDYSGLDHVMVFACGGLL
PSFWRIVTRAVRLDTKKTGFGVAAGVGFAILCLTCTKLVCLHTPYCNSAPEAVR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G08650 ZIP metal ion transporter fami... Lus10035606
[exp]
0 1
AT4G26270 PFK3 phosphofructokinase 3 (.1) Lus10011143
[exp]
1.4 0.9762
AT5G39890 Protein of unknown function (D... Lus10003861
[exp]
1.7 0.9824
AT3G52740 unknown protein Lus10004872
[exp]
2.0 0.9710
AT1G75390 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) Lus10041780
[exp]
2.8 0.9686
AT1G43800 Plant stearoyl-acyl-carrier-pr... Lus10018926
[exp]
3.9 0.9708
AT1G74940 Protein of unknown function (D... Lus10011923
[exp]
4.4 0.9596
AT5G59550 zinc finger (C3HC4-type RING f... Lus10040278
[exp]
6.0 0.9517
AT1G70730 PGM2 phosphoglucomutase 2, Phosphog... Lus10021777
[exp]
6.3 0.9506
AT3G48660 Protein of unknown function (D... Lus10003120
[exp]
6.7 0.9714
AT4G26270 PFK3 phosphofructokinase 3 (.1) Lus10043044
[exp]
7.3 0.9705

Lus10035606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.