Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08640 299 / 4e-102 Protein of unknown function (DUF3411) (.1) AT3G08630 290 / 8e-99 Protein of unknown function (DUF3411) (.1) AT2G37860 89 / 1e-20 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G22790 88 / 4e-20 RER1 reticulata-related 1 (.1) AT5G12470 76 / 4e-16 Protein of unknown function (DUF3411) (.1) AT2G40400 61 / 8e-11 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003242 [exp] 374 / 1e-129 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 77 / 2e-16 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 77 / 3e-16 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10019521 [exp] 75 / 2e-15 AT2G37860 280 / 1e-91 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10024346 [exp] 71 / 1e-14 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10009845 [exp] 69 / 2e-13 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10009956 [exp] 69 / 2e-13 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10040960 [exp] 69 / 2e-13 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10003180 [exp] 66 / 3e-12 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111300 [exp] 320 / 3e-110 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 312 / 3e-107 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.016G103100 [exp] 92 / 2e-21 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 88 / 3e-20 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.001G262200 [exp] 80 / 2e-17 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 74 / 3e-15 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 72 / 1e-14 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 40 / 0.0006 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 40 / 0.0006 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10035607 pacid=23147645 polypeptide=Lus10035607 locus=Lus10035607.g ID=Lus10035607.BGIv1.0 annot-version=v1.0 ATGGAAGAGCTAGTAGGCGTATCCGCCTGCGTCGTTGGGGACATGGCTTCTCGCCCTAACTTCGGCCTCAACGAACTCGATTTTGTCTTCTCCACCTTAG TAGTCGGCTCCATTCTCAATTTCACTCTAATGTATCTCTTAGCACCCACAGCTTTAACATCCGCTTCGGCGACTGCTCTCCCGGCAATATTCGCCAGCTG CCCCACCAGCCACATGTTCGAGCCCGGGGCGTTCACTCTGATGAATCGCCTCGGTACATTTGTGTACAAAGGAACCATCTTTGCATCGGTTGGATTCTTT GCGGGGCTTGCCGGGACTGCCCTGTCGAATGGATTGATCAAGATGAGGAAGAAGATGGATCCGAGCTTCGAGACCCCGAACAAGGCGCCTCCGACACTGC TGAATGCGGTGACGTGGGCGCTGCACATGGGGATCAGCAGTAACTTGAGGTACCAGACGTTGAATGGGGCGGAGTTTGTGTTAGCAAAAGCGCTCCCTCC GGTACCTTTCAAGACATCGGTTGTTGTGCTGAGATGCTTGAACAATGTGCTGGGAGGGATGTCTTTCGTTTTGTTGGCTAGGCTCACTGGTGCTCAGAGT GCTTCTGCTCCAAAACCAGTTGTAGCAGTGGCGGACGAGAAGGAGAAACTGCTGGATGATTGA
AA sequence Show only first row Show all	>Lus10035607 pacid=23147645 polypeptide=Lus10035607 locus=Lus10035607.g ID=Lus10035607.BGIv1.0 annot-version=v1.0 MEELVGVSACVVGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTALTSASATALPAIFASCPTSHMFEPGAFTLMNRLGTFVYKGTIFASVGFF AGLAGTALSNGLIKMRKKMDPSFETPNKAPPTLLNAVTWALHMGISSNLRYQTLNGAEFVLAKALPPVPFKTSVVVLRCLNNVLGGMSFVLLARLTGAQS ASAPKPVVAVADEKEKLLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	0	1
AT3G52960			Thioredoxin superfamily protei...		Lus10002843 [exp]	1.7	0.9383
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	2.0	0.9215
AT3G11690			unknown protein		Lus10021243 [exp]	3.0	0.9192
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	3.2	0.9121
AT5G57460			unknown protein		Lus10000167 [exp]	5.3	0.9188
AT2G31670			Stress responsive alpha-beta b...		Lus10017873 [exp]	6.5	0.9115
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	6.6	0.9049
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10011128 [exp]	7.5	0.8795
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	9.2	0.9014
AT3G52960			Thioredoxin superfamily protei...		Lus10003373 [exp]	11.0	0.8951

Compare expression of checked genes

Lus10035607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.