Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38610 469 / 8e-169 RNA-binding KH domain-containing protein (.1.2) AT3G08620 439 / 5e-157 RNA-binding KH domain-containing protein (.1) AT5G56140 269 / 8e-90 RNA-binding KH domain-containing protein (.1) AT4G26480 269 / 9e-90 RNA-binding KH domain-containing protein (.1) AT1G09660 239 / 3e-78 RNA-binding KH domain-containing protein (.1.2) AT5G51300 100 / 2e-23 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003241 [exp] 543 / 0 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 314 / 1e-107 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 314 / 2e-107 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 310 / 6e-106 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 273 / 2e-91 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 271 / 2e-90 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 261 / 2e-87 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 104 / 7e-25 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10013751 [exp] 42 / 0.0006 AT3G32940 240 / 8e-70 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111400 [exp] 516 / 0 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 499 / 0 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 407 / 1e-144 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 405 / 6e-144 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.003G005500 [exp] 282 / 5e-95 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.004G225900 [exp] 280 / 3e-94 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 275 / 3e-92 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.001G471000 [exp] 274 / 1e-91 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.001G126400 [exp] 104 / 7e-25 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 101 / 6e-24 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10035608 pacid=23147636 polypeptide=Lus10035608 locus=Lus10035608.g ID=Lus10035608.BGIv1.0 annot-version=v1.0 ATGTCGGGTCTGTATAATCAAAACTTCTCCCCAGCAAGAGCTGCATCTCCTCAGATTAGAACCACTCCTGATGTCGACAGTCAGTACCTCTCTGACCTAC TTGCTGAGCACCAAAAGCTAGGTCCTTTCATGCAAGTTCTCCCCATATGCAGCCGGCTTCTCAATCAAGAAATTTTTCGAGTTTCGGGGATGATGTCCAA CCAAGGGTTTGGTGACTTGGACCGATTGAGGCATAGAAGCCCCAGTCCTATGGGATCTTCCAACCTAATGTCCAACGTTCCTGGAAGCGGGCTTGGTGGC TGGAATAGCAATTCCCAAGAGAGATTGAGTGGACCGCCTGGAATGACAATGGACTGGCAAGGTGCACCAGCAAGCCCTAGTTCATATACTGTGAAGAGAA TTTTACGTTTGGAAATCCCTGTAGACACCTATCCAAACTTTAATTTTGTTGGTAGGCTTCTCGGTCCTAGAGGCAATTCTCTGAAACGGGTTGAAGCAAC TACAGGTTGTCGCGTATATATACGTGGTAAAGGATCAATAAAGGACCCGGACAAGGAGGAGAAGCTGAGAGGTAGACCAGGCTACGAGCACCTGAATGAT CCACTTCACATCTTGATCGAAGCCGACTTGCCCGCAAATATTGTGGATGTAAGGCTGAGACAGGCGCAAGAGATTATAGAAGAGCTGCTTAAACCTGTGG ATGAGTCGCAAGATTTCATAAAAAGGCAGCAGCTGCGGGAGTTGGCGATGCTGAACTCGAATTTCAGGGAAGAGAGTCCAGGGCCAAGCGGCGGCAGTGT GTCTCCCTTCAACACAAGTGGAATGAAAAGGGCGAAAACAGGACGCTGA
AA sequence Show only first row Show all	>Lus10035608 pacid=23147636 polypeptide=Lus10035608 locus=Lus10035608.g ID=Lus10035608.BGIv1.0 annot-version=v1.0 MSGLYNQNFSPARAASPQIRTTPDVDSQYLSDLLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDLDRLRHRSPSPMGSSNLMSNVPGSGLGG WNSNSQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLND PLHILIEADLPANIVDVRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGGSVSPFNTSGMKRAKTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38610			RNA-binding KH domain-containi...		Lus10035608 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	2.6	0.7749
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	6.4	0.8195
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	6.9	0.7906
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	9.9	0.7536
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	11.5	0.7494
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	12.4	0.7863
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	13.7	0.7803
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	20.9	0.7427
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	21.2	0.7383
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10039250 [exp]	21.9	0.7750

Compare expression of checked genes

Lus10035608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.