Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30050 148 / 4e-41 unknown protein AT5G01970 142 / 2e-39 unknown protein AT2G30530 125 / 8e-33 unknown protein AT4G02800 90 / 3e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003240 [exp] 208 / 2e-61 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10031947 [exp] 132 / 2e-35 AT5G01970 263 / 1e-85 unknown protein Lus10019115 [exp] 129 / 2e-33 AT2G30530 267 / 5e-86 unknown protein Lus10034444 [exp] 128 / 3e-33 AT2G30530 268 / 3e-86 unknown protein Lus10035153 [exp] 125 / 3e-32 AT5G01970 264 / 8e-85 unknown protein Lus10014668 [exp] 87 / 5e-19 AT4G02800 262 / 1e-85 unknown protein Lus10022037 [exp] 86 / 1e-18 AT4G02800 276 / 1e-91 unknown protein Lus10000658 [exp] 83 / 1e-17 AT4G02800 266 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111900 [exp] 153 / 5e-42 AT5G01970 352 / 2e-118 unknown protein Potri.016G141300 [exp] 144 / 3e-39 AT5G01970 353 / 2e-119 unknown protein Potri.019G132300 [exp] 137 / 3e-36 AT2G30530 253 / 9e-80 unknown protein Potri.013G160100 [exp] 132 / 8e-35 AT2G30530 266 / 8e-85 unknown protein Potri.002G053100 [exp] 83 / 1e-17 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 81 / 8e-17 AT4G02800 291 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035609 pacid=23147428 polypeptide=Lus10035609 locus=Lus10035609.g ID=Lus10035609.BGIv1.0 annot-version=v1.0 ATGTCCACTACTGCTATCTCCATGGCTCCTCCTCCTAGTATCCACCAGCACTCGTATTCCAGCCCTGATGGACTGGTCAGAAAGATGGACAATAGTAATC ATAAGGTTATAATTACATCCCCCGTCTTTCGTAAGAATGATGGAAACAAAGCAGCCGGAGAAAGCCCTCGGAAACTAGTACTGCAAACGTCGGCGGCCAG CTCATCGCCAAGCAGCAGGGATAATTATAATATTAATGCTAAATGTGGAGTTGCAGTGGATCCTTTGCAGTTGGTTCGACCCAACGTGGTACTCCAATCG TCCCAGCAACGTATGCACTCACACACCAACCATACGAACCCCGAGACTCAACTCAAGGCATCTCGCGACGTGGCGATGGCGACTGCAGCAAAAGCAAAAC TACTTCTACGGGAACTGAAAACGGTGAAAGCAGACTTGGCTTTTGCAAAGCAGAGATGCTCCCAGCTAGAACAGGAGAATGCTCTTTTGAGAGAGAGCCG AGACAAGGGCACTGGAAATAACCCAGCTGATGATGAACTGATACGTCTACAACTGGAGACACTATTGGCGGAGAAGGCACGACTGGCGAACGAGAATGCA TTCTATGCTCGTGAGAACTGTTACCTGAGAGAAATCGTGGAGTATCACCAGCTCTCGTTGATGCATCATGACATGGTTTACTTGGACGACGATGAAGATG AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGGAGGTGGGGGTACTGATCAAGAAGTAGTAGTGTACCCGGCGGCCAATAT GAACAATATGTCACCCCCTCCCTTGTCGCCTATTACCCCACCTGCTTCACCTTTACCTTCACCTCATTATAACAACACCACTAGTACTACTAGTACTAAT CCGAATATAGCAGCAGTGAATAATGATGATCAGCAGCATGTACCAGCTGCTGCTACTGTATCCAATTCCACCTCCTCGTCATCATCTGCTAGTACTGATC ACCACCAAGCTTCCAACCACCCTTCTACCGGCCGACAATAA
AA sequence Show only first row Show all	>Lus10035609 pacid=23147428 polypeptide=Lus10035609 locus=Lus10035609.g ID=Lus10035609.BGIv1.0 annot-version=v1.0 MSTTAISMAPPPSIHQHSYSSPDGLVRKMDNSNHKVIITSPVFRKNDGNKAAGESPRKLVLQTSAASSSPSSRDNYNINAKCGVAVDPLQLVRPNVVLQS SQQRMHSHTNHTNPETQLKASRDVAMATAAKAKLLLRELKTVKADLAFAKQRCSQLEQENALLRESRDKGTGNNPADDELIRLQLETLLAEKARLANENA FYARENCYLREIVEYHQLSLMHHDMVYLDDDEDEEEEEEEEEEEEEEEEEGGGGTDQEVVVYPAANMNNMSPPPLSPITPPASPLPSPHYNNTTSTTSTN PNIAAVNNDDQQHVPAAATVSNSTSSSSSASTDHHQASNHPSTGRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30050			unknown protein		Lus10035609 [exp]	0	1
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	1.0	0.9986
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	5.5	0.9966
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Lus10033477 [exp]	6.2	0.9638
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016175 [exp]	6.5	0.9602
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	6.7	0.9966
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	7.5	0.9367
					Lus10032788 [exp]	7.6	0.9352
					Lus10009618 [exp]	7.7	0.9966
					Lus10005830 [exp]	8.7	0.9966
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	9.5	0.9966

Compare expression of checked genes

Lus10035609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.