Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01990 585 / 0 Auxin efflux carrier family protein (.1) AT1G71090 281 / 1e-90 Auxin efflux carrier family protein (.1) AT1G76520 210 / 9e-64 Auxin efflux carrier family protein (.1.2) AT2G17500 200 / 7e-60 Auxin efflux carrier family protein (.1.2.3.4) AT1G20925 196 / 8e-58 Auxin efflux carrier family protein (.1) AT5G65980 194 / 8e-58 Auxin efflux carrier family protein (.1) AT1G76530 153 / 4e-42 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003240 [exp] 765 / 0 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 191 / 2e-56 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 187 / 8e-55 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 185 / 4e-54 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10035978 [exp] 184 / 1e-53 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10036000 [exp] 177 / 7e-52 AT1G71090 486 / 3e-172 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 180 / 8e-52 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10016704 [exp] 176 / 1e-51 AT1G71090 481 / 2e-170 Auxin efflux carrier family protein (.1) Lus10002280 [exp] 170 / 3e-49 AT1G71090 324 / 9e-109 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112200 [exp] 618 / 0 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 601 / 0 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.008G127700 [exp] 270 / 2e-86 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 269 / 9e-86 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 265 / 3e-84 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 265 / 4e-84 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.005G099300 [exp] 218 / 1e-66 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.003G108100 [exp] 191 / 2e-56 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 183 / 2e-53 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.002G003500 [exp] 182 / 4e-53 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10035610 pacid=23147363 polypeptide=Lus10035610 locus=Lus10035610.g ID=Lus10035610.BGIv1.0 annot-version=v1.0 ATGTCGCATTCGCACGCAATTCATAGATTGTTGTCGGCGATCCAAGACCAGGATCCCATGGGTGGACAGTCAGTCCTCGATTCCATCAAAATCGCAGTTC TTCCAATAGCCAAAGTCTTCACGATGTGCTTCTTGGGATTTCTTATGGCCTCCAAGTACGTCAACATCTTGCCAGCCTCCGGGAGGAAACTCTTGAACGG GTTGGTCTTCTCGCTTTTGCTGCCCTGCTTAATCTTCTCACAACTTGGCCAAGCTGTCACTTTGCAGAAGATGCTGCAGTGGTGGTTCATTCCGGTCAAC GTTGTCCTGGGCAGCATCTCTGGCTCACTCATTGGATTCATCGTTGCATCCATAGTTCGACCTCCCTACCCGTTTTTCAAGTTCACAATCGTACATATTG GAATTGGGAACATCGGCAATGTGCCCCTTGTCTTGATCGCTGCTCTATGTAGAGATCCATCCAACCCTTTCGGCGACTCGGAAAAATGTAGCACAGATGG AACTGCTTATATTTCATTTGGCCAGTGGGTTGGTGCGATCATCCTTTACACATATGTATTCAATATGCTGGCACCTCCTCCAGAAGGCACCTTTGATATT GAAAATGTGAACTTTTCAACCAAGAGTTCTCTAAAAGATTCTTCACCTGAGCGAATTCCTTTAGTTGCCCATGAGAATTTAGTCAAAGATACAGGTGCTT CAAAGCAACAAAAGATTATGGACTTTCTGGTTCTCCTATGTGAGAAACTGAAGCTGAAGCAAATCCTTCAACCGGCTATAATTGCTTCAATCTTAGCCAT GGTTCTGGGCGCAGTACCATTCTTTAAGCGACTGATTTTCACAACTGATGCACCGCTGTTCTTTTTTACCGACAGCTGCATCATTCTTGGGGAAGCTATG ATCCCGTGCATATTGTTGGCTTTAGGTGGCAATCTCGTTGATGGGCCAGGAAGCTCTAAACTTGGTCTACGAACAACCGCTGCGATTATTTTTGCGCGGT TAGTTCTGGTGCCGCCCGCTGGCCTAGGAATTGTTACATTGGCCGATAAGCTGGGTTTCCTTCCTGCTGATGATAAGATGTTCCGGTTCGTGCTACTTAT ACAGCACACAATGCCAACATCTGTCCTTTCTGGTGCAGTGGCCAGTCTAAGGGGTTGTGGGAAGGAGGCTGCTGCTGTATTTGAAGTGCCTCATTACACT CCAGTATTAGGTGCTGCTGCTGCTGCTGCTGTAGCTTGTAACTTCGCGGATGAAACAAAACGAGAATAG
AA sequence Show only first row Show all	>Lus10035610 pacid=23147363 polypeptide=Lus10035610 locus=Lus10035610.g ID=Lus10035610.BGIv1.0 annot-version=v1.0 MSHSHAIHRLLSAIQDQDPMGGQSVLDSIKIAVLPIAKVFTMCFLGFLMASKYVNILPASGRKLLNGLVFSLLLPCLIFSQLGQAVTLQKMLQWWFIPVN VVLGSISGSLIGFIVASIVRPPYPFFKFTIVHIGIGNIGNVPLVLIAALCRDPSNPFGDSEKCSTDGTAYISFGQWVGAIILYTYVFNMLAPPPEGTFDI ENVNFSTKSSLKDSSPERIPLVAHENLVKDTGASKQQKIMDFLVLLCEKLKLKQILQPAIIASILAMVLGAVPFFKRLIFTTDAPLFFFTDSCIILGEAM IPCILLALGGNLVDGPGSSKLGLRTTAAIIFARLVLVPPAGLGIVTLADKLGFLPADDKMFRFVLLIQHTMPTSVLSGAVASLRGCGKEAAAVFEVPHYT PVLGAAAAAAVACNFADETKRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	0	1
AT3G51130			unknown protein		Lus10014270 [exp]	4.6	0.8527
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	6.2	0.8305
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	8.4	0.7964
AT5G55060			unknown protein		Lus10043118 [exp]	8.5	0.8071
AT1G55535			unknown protein		Lus10010333 [exp]	9.6	0.8136
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	9.9	0.8047
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	11.0	0.8043
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	11.5	0.8032
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	11.6	0.7957
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	12.6	0.8269

Compare expression of checked genes

Lus10035610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.