Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20780 182 / 2e-58 CML42 calmodulin like 42 (.1) AT5G44460 156 / 2e-48 CML43 calmodulin like 43 (.1) AT2G43290 88 / 1e-21 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G59440 79 / 2e-18 Calcium-binding EF-hand family protein (.1) AT4G03290 73 / 2e-16 EF hand calcium-binding protein family (.1) AT1G05990 73 / 2e-16 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT1G21550 63 / 1e-12 Calcium-binding EF-hand family protein (.1) AT4G14640 62 / 2e-12 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G07490 62 / 3e-12 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT2G41100 62 / 1e-11 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003239 [exp] 294 / 2e-102 AT4G20780 249 / 5e-85 calmodulin like 42 (.1) Lus10021134 [exp] 195 / 3e-63 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10017174 [exp] 190 / 2e-61 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10000972 [exp] 77 / 9e-18 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10027701 [exp] 76 / 8e-17 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10028657 [exp] 70 / 6e-15 AT1G21550 122 / 9e-36 Calcium-binding EF-hand family protein (.1) Lus10009127 [exp] 69 / 5e-14 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10039391 [exp] 66 / 8e-14 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10020389 [exp] 64 / 9e-14 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112500 [exp] 193 / 7e-63 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.016G142000 [exp] 185 / 2e-59 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.017G029700 [exp] 80 / 2e-18 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G077300 [exp] 77 / 6e-18 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.005G183300 [exp] 76 / 2e-17 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.007G128600 [exp] 76 / 4e-17 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.006G065900 [exp] 72 / 3e-15 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G276500 [exp] 69 / 1e-14 AT4G20780 74 / 8e-17 calmodulin like 42 (.1) Potri.018G127100 [exp] 69 / 2e-14 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.008G159300 [exp] 66 / 1e-13 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10035611 pacid=23147486 polypeptide=Lus10035611 locus=Lus10035611.g ID=Lus10035611.BGIv1.0 annot-version=v1.0 ATGGAAGATTCATCGGCAAAATCAGCGGGATCGCCGCAAAAGTTTAAGAGCGCCTGGCGCTCCTCATCCTTTCGGTTGAGATCCCCGAGCCTTAACTCTC TCCGGCTCCGCCGTATTTTTGACATATTCGACAAGAACAGAGACGGAATGATAACGGTGCACGATATGAACCAGGCCCTAACCCTATTGGGCCTGGACGC AGACTTAACTGAATTGGAATCCACCATCAAGGCTCATATCAAGCCCGGGAACGAGGGCCTCGAGTTTGAGGACTTTATGTCCCTCCACCAATCGCTAGAC GACGCACTGTTCGGCGGGGGACAACATCCACAACATGACGACGGTGAATCGAAGATGGATCACATGACGCAGGAGGAGTCGGATCTATCCGATGCATTCA AGGTATTCGATGAAGACGGCGACGGCTACATTTCTGTCGACGAGTTGCAAGTGGTTCTGCGGAAGCTGGGCTTGCCAGAGGCCACCGATATCGACAGGGT CCAACAGATGATCGTCTCTGCTGACCGCAACCGTGACGGTCGTGTCGATTTTTTCGAATTTAAAGATATGATGCGATCTGTTCTCATCCCTACCTCTTGA
AA sequence Show only first row Show all	>Lus10035611 pacid=23147486 polypeptide=Lus10035611 locus=Lus10035611.g ID=Lus10035611.BGIv1.0 annot-version=v1.0 MEDSSAKSAGSPQKFKSAWRSSSFRLRSPSLNSLRLRRIFDIFDKNRDGMITVHDMNQALTLLGLDADLTELESTIKAHIKPGNEGLEFEDFMSLHQSLD DALFGGGQHPQHDDGESKMDHMTQEESDLSDAFKVFDEDGDGYISVDELQVVLRKLGLPEATDIDRVQQMIVSADRNRDGRVDFFEFKDMMRSVLIPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10035611 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	4.4	0.7208
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	5.8	0.7189
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	7.3	0.7175
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	8.1	0.6992
					Lus10000914 [exp]	8.5	0.7175
AT3G22040			Domain of unknown function (DU...		Lus10007506 [exp]	36.5	0.5873
AT3G17940			Galactose mutarotase-like supe...		Lus10026181 [exp]	42.8	0.6663
AT5G06850			C2 calcium/lipid-binding plant...		Lus10037480 [exp]	42.8	0.6746
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	44.5	0.6900
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	45.2	0.6862

Compare expression of checked genes

Lus10035611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.