Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 129 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 78 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 70 / 2e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 66 / 6e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G52330 51 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT2G01080 45 / 1e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64450 42 / 0.0001 Glycine-rich protein family (.1) AT4G23930 40 / 0.0007 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003238 [exp] 360 / 2e-127 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 216 / 2e-71 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 214 / 1e-70 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 197 / 2e-63 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 196 / 6e-63 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 96 / 8e-24 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 93 / 3e-23 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 93 / 3e-23 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 91 / 2e-22 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142300 [exp] 192 / 8e-62 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 183 / 3e-58 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 98 / 3e-25 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 89 / 1e-21 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 82 / 4e-19 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 73 / 2e-15 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 69 / 4e-14 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 66 / 3e-13 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 66 / 4e-13 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 65 / 2e-12 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10035612 pacid=23147550 polypeptide=Lus10035612 locus=Lus10035612.g ID=Lus10035612.BGIv1.0 annot-version=v1.0 ATGGAAGTTGAAGCCTTAAATCAGTCCTCGCCGTCGACAAAGCCTCCTCCGAACACACAGCAGAGCACAACGGCGGACTACAACGGCGATCCATTTGCAG CCACCAGCAGCAGCAAGAGGCAAAAACGAAACCGTAGAAGAAACATATGCTTGTTATCCACTGCGGCCGTAATCATACTGCTCATCCTCATCGCCCTCAT CCTATCCCTCACCGTTTTCAAGGCCAAGCGCCCCGTCATCACAGTCAACAACGTCATCCTCGACGACCTCAACTTCTCCTTGGATTTAGCCAGGCTGGCC GTCCACCTCAACCTAACCCTCGACCTATATCTCACCGTCAGCAACCCCAACAAGGTGGGTCTGAAATTCTCCAACTCTTCAGCCTCCCTCAGTTACAGAG GACTGGAAGTCGGACAAGTTCCCATACCCGCCGGCCGTGTTTCTGCCGATTCAAACACCGCTTTCAACTCCACCCTTACCCTCATGGCGGATCGGCTCCT ATCCAACTCTCAACTCTTCTCCGATGTCATCTCTGCAGGAGGCGCCATCCCTTTCAACAGCTATGCCAGGATCAAGGGTAAAGTCTCTGTTTTTAAGCTC TTCAATGTCCGCGTCACTTCCACCTCCACGTGTGAGTTTACTGTCTTCCTGCAAAACCGGACAATTGGGGATCAAACCTGCAACTACAAGACTAAACTGT AG
AA sequence Show only first row Show all	>Lus10035612 pacid=23147550 polypeptide=Lus10035612 locus=Lus10035612.g ID=Lus10035612.BGIv1.0 annot-version=v1.0 MEVEALNQSSPSTKPPPNTQQSTTADYNGDPFAATSSSKRQKRNRRRNICLLSTAAVIILLILIALILSLTVFKAKRPVITVNNVILDDLNFSLDLARLA VHLNLTLDLYLTVSNPNKVGLKFSNSSASLSYRGLEVGQVPIPAGRVSADSNTAFNSTLTLMADRLLSNSQLFSDVISAGGAIPFNSYARIKGKVSVFKL FNVRVTSTSTCEFTVFLQNRTIGDQTCNYKTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10035612 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10015279 [exp]	2.6	0.9232
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	7.5	0.9058
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	10.2	0.8901
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	11.4	0.8979
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10026729 [exp]	12.2	0.8401
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	13.6	0.8963
					Lus10016041 [exp]	14.0	0.8850
AT3G44620			protein tyrosine phosphatases;...		Lus10043376 [exp]	14.1	0.8027
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	15.3	0.8900
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	16.4	0.8767

Compare expression of checked genes

Lus10035612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.