Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54190 748 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G38630 721 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003237 [exp] 845 / 0 AT3G54190 751 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142600 [exp] 746 / 0 AT3G54190 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G113000 [exp] 739 / 0 AT3G54190 814 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G064100 [exp] 715 / 0 AT3G54190 812 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091700 [exp] 699 / 0 AT3G54190 764 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091800 [exp] 641 / 0 AT3G54190 722 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091600 [exp] 282 / 1e-93 AT3G54190 338 / 8e-116 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035613 pacid=23147656 polypeptide=Lus10035613 locus=Lus10035613.g ID=Lus10035613.BGIv1.0 annot-version=v1.0 ATGATGATTGAGGGCAGGAGAATCTCTGCCAATCCCAGGCCTTGCTCCGGTAGGAGAGTGTTGGCTAGGAAGCGGCCTCGAGTTGAAGGACTCCTTAATA CGGTGAAGAAACTTCACCGCCGAGAGATTTCCTCCAAGCGGGATCGTGCTTTCACGATGAGCAATGCCCAGGAGAGATTTCGCAACATGCGTTTGATGGA AGAGTACGACACTCATGACCCAAAAGGCCATTGCTCAGTGGTACTTCCATTCTTGATGAAGAGAACTAAAGTAATAGAGATAGTGGCTGCTCGTGATATC GTATTTGCTCTTGCACATTCTGGTGTATGTGCGGCCTTTAGTAGAGAGACAAATCAGAGGATATGTTTTCTAAACGTAAGTCCTGATGAGGTTATCCGAA GCCTGTTTTATAACAAGAACAATGATTCCCTTATCACAGTTTCGGTATATGCCTCTGACAATTTCAGCTCCTTAAAATGCAGATCAACACGAATTGAGTA CATACGTAGGGGCCAGCCTGATGCAGGGTTTGCCCTATTTGAATCCGAGTCTTTGAAGTGGCCTGGATTTGTTGAATTTGACGATGTCAATGGCAAGGTG CTTACTTACTCTGCGCAAGACAGTCCGGGGATCATGCTGTTAATTTTCAATCGATCAAGTAGCCACGTTCCTCTGAAAATTTTATCAATCGAAGATGGTA CTGTTCTCAAATCATTCAACCATCTGCTTCATCGAAATAAGAAGGTTGACTTCATTGAACAATTTAACGAGAAACTTCTTGTCAAGCAAGAAAATGAGAA TCTCCAAATTCTTGATGTTCGAAATGCTGAGCTGATTGAAGTCAGCAAAACTGAATTCATGACTCCATCTGCATTCATCTTTTTGTACGAGAACCAGCTG TTCTTAACATTCAGAAATCGGACAGTTGCTGTCTGGAATTTCCGCGGGGAGCTCGTAACGTCTTTTGAGGATCACCTATTGTGGCACCCCGACTGCAACA CCAATAACATATACATAACGAGTGATCAAGATCTTATTATTTCGTACTGCAAGGTTGAATCTGAGGATCAGTGGATGGAAGCAAATGGGAAGTGTTTGGC TAAAATAAACGCTTCAAATGGAAGACCAAAGATTGATGATAAGAGTAGCAGTAGTAGTGGGTCAACTGAGCGGCTAACATCGATGAGAAGCACGGCAGGG GAAGCACTTGAAGACATAACTGCCCTTTTCTACGACGAAGAACGCAACGAGATCTATACTGGGAACAGGCATGGCCTGGTCCACAGCATGAACACGGCAG AAGGGAATCACCCACTAAGAACAATTAGAGCATCAGGAGAAGAAGAGAAGGCCAATTAA
AA sequence Show only first row Show all	>Lus10035613 pacid=23147656 polypeptide=Lus10035613 locus=Lus10035613.g ID=Lus10035613.BGIv1.0 annot-version=v1.0 MMIEGRRISANPRPCSGRRVLARKRPRVEGLLNTVKKLHRREISSKRDRAFTMSNAQERFRNMRLMEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAARDI VFALAHSGVCAAFSRETNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGQPDAGFALFESESLKWPGFVEFDDVNGKV LTYSAQDSPGIMLLIFNRSSSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELIEVSKTEFMTPSAFIFLYENQL FLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKVESEDQWMEANGKCLAKINASNGRPKIDDKSSSSSGSTERLTSMRSTAG EALEDITALFYDEERNEIYTGNRHGLVHSMNTAEGNHPLRTIRASGEEEKAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54190			Transducin/WD40 repeat-like su...		Lus10035613 [exp]	0	1
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	5.3	0.8390
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	6.5	0.8468
AT1G48950			C3HC zinc finger-like (.1)		Lus10038947 [exp]	8.1	0.8566
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	11.0	0.8281
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	12.9	0.8528
AT5G41270			unknown protein		Lus10030018 [exp]	14.7	0.8172
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	17.9	0.8150
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10008637 [exp]	19.9	0.8160
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	30.0	0.7996
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	31.9	0.8173

Compare expression of checked genes

Lus10035613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.