Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38650 613 / 0 GAUT7, LGT7 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) AT5G47780 283 / 5e-87 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 280 / 6e-85 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT2G30575 270 / 9e-82 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 261 / 1e-78 GAUT6 galacturonosyltransferase 6 (.1.2) AT4G38270 246 / 2e-72 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 222 / 1e-64 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G18580 212 / 8e-61 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 200 / 3e-56 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G20810 191 / 2e-53 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003235 [exp] 1096 / 0 AT2G38650 617 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Lus10038739 [exp] 293 / 5e-90 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 260 / 2e-77 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 266 / 4e-77 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10036540 [exp] 257 / 1e-75 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 252 / 5e-75 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10014750 [exp] 236 / 1e-69 AT1G06780 611 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10013832 [exp] 246 / 3e-69 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024859 [exp] 234 / 2e-68 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143966 [exp] 684 / 0 AT2G38650 620 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Potri.006G114300 [exp] 676 / 0 AT2G38650 626 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Potri.016G001700 [exp] 283 / 3e-86 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.014G073800 [exp] 279 / 1e-84 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 275 / 5e-83 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 271 / 1e-81 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 256 / 5e-77 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.005G218900 [exp] 251 / 1e-74 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.015G060800 [exp] 211 / 2e-60 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.012G064500 [exp] 201 / 4e-57 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10035615 pacid=23147556 polypeptide=Lus10035615 locus=Lus10035615.g ID=Lus10035615.BGIv1.0 annot-version=v1.0 ATGAAAGGCGGGGGCTCATCCGCGGCTTTGGGTTATCCGGCGAAAAGGCGGTGGCGATGTTTGGCGATGGGAGTGCTCTTTCTCGTTGTGCTTTCTATGC TTGTTCCCCTCGTCTTCTTGCTCGGCCTTTACAATGGTTTTCACCCCACCGGATACATATCTGATCAGAGACCTAGTTCAGCTTCGGATGACATTGTAGC TGAGCATGGACATAATATCTCTGATGTTGAGCATCACTCTGAGAGGGATACATCCAGCCACGTTGACAAGGTTATCAAAAGACTTGTAACAATTCTTCCC AAGGATATTGTTAAAAACCATCCAAACAAAGAGAAGAACGGAACTATCCAGATGGGTTCTTCTGGCGGTGGACCAGGAAAAGCAGGTTTACAGAGGCCAC CAACCAGTCAAAAACTATCCCCAAGCAAACCTAATAAGAGTGTTGGTGATGGTGTTGAAGTTCGTAGAAATAGAAGTACTGTAGTAGACCAACGTGTGAG GCTTTGTGAGCTCAGTTTTGGGAGCTATTGTCTCTGGCTGGAAGAAAATAGAGAAGATATGAAGGATGTCATGGTGAAAAAACTGAAGGATAGGCTGTTT GTGGCTCGAGCTTATTTCCCTAGCATAGCTAAACTTCCAGCACAGAGCAAGCTTTCTCATGAGTTAAAACAAAATATTCAAGACCTGGAAAAGATATTTA GCGAGAGTTCAACTGACCCTGATCTTCCACCATTTATTGAGAAAAAACTTCAGCGGATGGAAGCTGCAATATCCAAGGCACAGTTAGTTCCTGCTGTGGA GTGTAGTAATGTTGATAAGAAATTGAGACAGATACTTGATTTGACGGAGGATGAAGCGAACTTTCACATGAAGCAGAGTGCATTCCTCTACCAACTTGCA GTCCAGACTATGCCTAAGAGCCATCATTGTCTGCTTATGAGATTGACAGTTGAATATTTTAAATCGTCTCTATATGCTACCCAGGTTGCTCACCCTGAGA AGTACTCAGATCCAACGCTGCATCATTACATTATACTATCCAAAAATGTCCTGGCATCATCAGTTGTGATCAACTCCACCGTTTCTCATGCCAGAGAAAC TGGAAATCTGGCTTTCCATGTGCTGACAGATGCTCAGAACTATTTTGCAATGAAACACTGGTTCCTCAGAAACATGTACAAGAAAGCAGTTGTGGAAGTG ATCAATATTGAAGATCTTAGCCTGGATGATGATAAGTCAGCTCTTTCAAGTCTTTCTTTGCCAGTGGAATTTCGTGTTACCTTACACAGTAATGACAATC CACCTGAAAACCATTTGAAGACTGAATACCTGTCTGTTTTTTCTCATTCTCACTATCTTCTTCCATACATATTTCCAAAGTTGAAGAGGATAGTGGTTCT GGATGACGATGTTGTTGTCCAGAGAGACTTGACGGAGTTGTGGAGTCTGAAGATGGGAGGAAAGGTAGTCGGTGCTTTGCAGTTATGTTCGGTGCGGCTA GCTGAGCTTAGCAATTTGTTTGGTGACAGCAGCTTTGACAGAAACTCTTGCACTTGGTTGTCTGGTTTAAATGTTGTCGATTTAGTCCGATGGAGAGAGC TGGGTCTTACTAATGTTTACCAGAAGTTCAGCCAAGAGGCCAAAGGCACAGGATCAGCTGAAGCTGTTGCATTGCGTGGAAGCTTGCTTGCATTTCAAGA TATGGTATATCCCCTTGATGATTCATGGGTTTTGTCTGGATTAGGTCATGAACATGGATTCGACCTCCAGAAAACTAAAAATGCTGCAGTGCTACACTAT AACGGAAACTTGAAACCTTGGCTGGAATTGGGAATCCCCAAGTACAAACGCCATTGGCAGAGGTTCTTAAACAGAGAGGATCAGTTCCTAGCTGAGTGCA ACGTGAATTCATGA
AA sequence Show only first row Show all	>Lus10035615 pacid=23147556 polypeptide=Lus10035615 locus=Lus10035615.g ID=Lus10035615.BGIv1.0 annot-version=v1.0 MKGGGSSAALGYPAKRRWRCLAMGVLFLVVLSMLVPLVFLLGLYNGFHPTGYISDQRPSSASDDIVAEHGHNISDVEHHSERDTSSHVDKVIKRLVTILP KDIVKNHPNKEKNGTIQMGSSGGGPGKAGLQRPPTSQKLSPSKPNKSVGDGVEVRRNRSTVVDQRVRLCELSFGSYCLWLEENREDMKDVMVKKLKDRLF VARAYFPSIAKLPAQSKLSHELKQNIQDLEKIFSESSTDPDLPPFIEKKLQRMEAAISKAQLVPAVECSNVDKKLRQILDLTEDEANFHMKQSAFLYQLA VQTMPKSHHCLLMRLTVEYFKSSLYATQVAHPEKYSDPTLHHYIILSKNVLASSVVINSTVSHARETGNLAFHVLTDAQNYFAMKHWFLRNMYKKAVVEV INIEDLSLDDDKSALSSLSLPVEFRVTLHSNDNPPENHLKTEYLSVFSHSHYLLPYIFPKLKRIVVLDDDVVVQRDLTELWSLKMGGKVVGALQLCSVRL AELSNLFGDSSFDRNSCTWLSGLNVVDLVRWRELGLTNVYQKFSQEAKGTGSAEAVALRGSLLAFQDMVYPLDDSWVLSGLGHEHGFDLQKTKNAAVLHY NGNLKPWLELGIPKYKRHWQRFLNREDQFLAECNVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	0	1
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	1.0	0.8173
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	1.7	0.7585
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	2.8	0.7347
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	4.5	0.7580
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	5.5	0.7439
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	6.6	0.7595
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	7.5	0.7408
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	9.7	0.7538
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	9.9	0.7298
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	13.8	0.6907

Compare expression of checked genes

Lus10035615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.