Plant FIBer expression Database

Lus10035617 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027471
[exp]
104 / 2e-26 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1)
Lus10029998
[exp]
64 / 1e-11 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1)
Lus10039716
[exp]
60 / 1e-10 ND /
Lus10029986
[exp]
57 / 4e-09 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10030016
[exp]
52 / 2e-07 AT2G32970 799 / 0.0 unknown protein
Lus10007227
[exp]
50 / 4e-07 ND /
Lus10037440
[exp]
49 / 2e-06 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10035617 pacid=23147678 polypeptide=Lus10035617 locus=Lus10035617.g ID=Lus10035617.BGIv1.0 annot-version=v1.0
ATGGAATTAATAGATCCGCAACTGAATGTTTTGGAGATCATAAATTCTGGATTGAAAGTGAGTGATCTTCAAGGGGTGGTTTCTAAGCTCCTGTCTTTGA
AATCTTTAAACTCGTACGGATTCCCCCCAACGGAGAAGAAGCTGCGGAAACTCTCGAGTCGCAAGCTAGAAAAAAGCAGGCTTTCGGCATGGACAAGATT
GGTGGAGATCGAGCTCAATGTTGTTCCACATTTAGAGAAATTCCTACTTAGATACGATGAATCCTTGCCGGCTGACCAGATAAAGAAATGTGAAATCAAA
AACTCTGCCGCTAGTTGCCAGTGGGAACTTGATTTCCATATGAAGCTTAGATTTTCTTTCGGCAGTACACGATCATCGTTTATTGAATTCAAGACTTCCA
TTGCCAGATTCTCAAAGTTCCACACCGTCAACCTCTTTTTGGGGTCCGGATCAAAGCTCTCCAGTAAGCTGCCAAGCTGCAACCATCAGCATCACAGAAC
AAGAAGCGTCAAGCAGCTGCCAAAGGAGGGCTTGTTCAGCCTCAAGAATAACATATCCGTCGGAATTAAGAGCGACACACAAGAAAAGGAGGGCTTTCAT
TTGGTATACATATTTCAGATGACAACAGCCTCAAGTAAAACTGAGCTGCCAAAGCTACAACTCGTAACTTGCTCTTCAAGCTAG
AA sequence
>Lus10035617 pacid=23147678 polypeptide=Lus10035617 locus=Lus10035617.g ID=Lus10035617.BGIv1.0 annot-version=v1.0
MELIDPQLNVLEIINSGLKVSDLQGVVSKLLSLKSLNSYGFPPTEKKLRKLSSRKLEKSRLSAWTRLVEIELNVVPHLEKFLLRYDESLPADQIKKCEIK
NSAASCQWELDFHMKLRFSFGSTRSSFIEFKTSIARFSKFHTVNLFLGSGSKLSSKLPSCNHQHHRTRSVKQLPKEGLFSLKNNISVGIKSDTQEKEGFH
LVYIFQMTTASSKTELPKLQLVTCSSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035617
[exp]
0 1
AT4G01830 ABCB5, PGP5 ATP-binding cassette B5, P-gly... Lus10004529
[exp]
5.5 1.0000
Lus10011061
[exp]
6.8 1.0000
AT3G25050 XTH3 xyloglucan endotransglucosylas... Lus10011845
[exp]
9.2 1.0000
Lus10011759
[exp]
9.5 1.0000
AT3G50440 ATMES10 ARABIDOPSIS THALIANA METHYL ES... Lus10012855
[exp]
9.8 1.0000
Lus10022145
[exp]
10.2 1.0000
Lus10014487
[exp]
10.6 1.0000
AT1G67623 F-box family protein (.1) Lus10022147
[exp]
11.7 1.0000
AT1G26420 FAD-binding Berberine family p... Lus10023368
[exp]
13.5 1.0000
AT1G71160 KCS7 3-ketoacyl-CoA synthase 7 (.1) Lus10020662
[exp]
15.2 1.0000

Lus10035617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.