Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43590 229 / 2e-75 Chitinase family protein (.1) AT3G54420 226 / 3e-74 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43610 221 / 3e-72 Chitinase family protein (.1) AT2G43620 220 / 1e-71 Chitinase family protein (.1) AT2G43580 214 / 1e-69 Chitinase family protein (.1) AT2G43570 199 / 1e-63 CHI "chitinase, putative", chitinase, putative (.1) AT1G56680 177 / 4e-55 Chitinase family protein (.1) AT3G47540 172 / 1e-53 Chitinase family protein (.1.2) AT2G43600 154 / 4e-46 Chitinase family protein (.1) AT4G01700 153 / 1e-45 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003231 [exp] 330 / 1e-115 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035621 [exp] 311 / 8e-106 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035620 [exp] 300 / 2e-101 AT2G43590 223 / 6e-71 Chitinase family protein (.1) Lus10024367 [exp] 276 / 2e-94 AT3G54420 226 / 3e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010866 [exp] 273 / 2e-93 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024366 [exp] 260 / 2e-88 AT3G54420 226 / 2e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010861 [exp] 258 / 2e-87 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 258 / 3e-87 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10024369 [exp] 256 / 2e-86 AT3G54420 230 / 6e-76 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 275 / 2e-93 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 259 / 4e-87 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 256 / 4e-86 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 250 / 1e-83 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 244 / 3e-81 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 235 / 1e-77 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 231 / 3e-76 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G141700 [exp] 169 / 2e-51 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 164 / 1e-49 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 161 / 7e-49 AT1G02360 413 / 2e-147 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10035618 pacid=23147520 polypeptide=Lus10035618 locus=Lus10035618.g ID=Lus10035618.BGIv1.0 annot-version=v1.0 ATGGGCAACCACCTTCAACTTCTCATCTCCGCCATAGCCATACTTGTGGCCTCCTCCGCCCTCCCCATCACGGTTGTGGAGGCTCAGGTCGGGCAGGGCC CGCTAGCCAACATCGTCACTCCAGCTTTCTTCGAAGGCATTCGCAACCGCGCCCCCAACAACTGTCCCGGGAAGTCATTCTACACTCACGAGGCCTTTCT CCAGGCCGCAAGATCCTACCCTCTATTCGCCATTCGGGGTCTTTCCGCTGAAGCTTCTAGGCGTGAGATCGCGGCCTTCTTCGCCCATGTCACCCACGAA ACTGGAAATATGTGCAATATTGAAGAAATTCATAGGGGAATATACTGCGACCCTGGTCGGTACCCGTGTGCTAAGGGGAAGAGATACTACGGGCGGGGCC CACTTCAGCTGACGTGGAACTACAACTACGCGGAAGCCGGTAGGGCCAACGGGTTTGACGGCATCGGAGACCCAGATATGGTGGCGAGAGATCCGATACT TGCGTGGAAGACGGCGTTATGGTTTTGGATGACGCAAGTCCGTCCCGTGCTCTCTCAGGGTTTCGGAGCCACCATCCGTAGGATTAACGGTATGGAATGC AACGGCGGCAACGTCCTCGCCGTCAGGGCTCGGGTCGGCTACTATACCGCTTACTGCCACCAGTTGGGAGTCAACGTTGAGCCTAATGTCAGCTGTTAA
AA sequence Show only first row Show all	>Lus10035618 pacid=23147520 polypeptide=Lus10035618 locus=Lus10035618.g ID=Lus10035618.BGIv1.0 annot-version=v1.0 MGNHLQLLISAIAILVASSALPITVVEAQVGQGPLANIVTPAFFEGIRNRAPNNCPGKSFYTHEAFLQAARSYPLFAIRGLSAEASRREIAAFFAHVTHE TGNMCNIEEIHRGIYCDPGRYPCAKGKRYYGRGPLQLTWNYNYAEAGRANGFDGIGDPDMVARDPILAWKTALWFWMTQVRPVLSQGFGATIRRINGMEC NGGNVLAVRARVGYYTAYCHQLGVNVEPNVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10035618 [exp]	0	1
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009278 [exp]	2.0	0.8361
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010863 [exp]	2.4	0.8048
					Lus10022169 [exp]	3.7	0.8479
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	9.7	0.7574
AT5G05340			Peroxidase superfamily protein...		Lus10030145 [exp]	10.2	0.6317
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	10.7	0.7574
					Lus10014737 [exp]	11.5	0.7574
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	12.3	0.7574
					Lus10019558 [exp]	13.1	0.7574
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	13.8	0.7574

Compare expression of checked genes

Lus10035618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.