Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35130 794 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 485 / 3e-159 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 479 / 1e-157 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 479 / 5e-157 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 457 / 2e-149 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 446 / 2e-144 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 437 / 3e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 419 / 7e-136 MEF22 mitochondrial editing factor 22 (.1) AT3G22690 422 / 1e-135 unknown protein AT3G03580 421 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003233 [exp] 1535 / 0 AT4G35130 775 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 478 / 1e-157 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019735 [exp] 479 / 2e-157 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 476 / 4e-156 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 476 / 2e-155 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 480 / 5e-152 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 464 / 2e-150 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 462 / 2e-149 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 456 / 1e-147 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178200 [exp] 976 / 0 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 501 / 5e-166 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 498 / 2e-165 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 501 / 3e-165 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 477 / 5e-157 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 474 / 2e-155 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 466 / 1e-151 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 459 / 1e-148 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 457 / 1e-147 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 438 / 1e-141 AT3G22690 1050 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035619 pacid=23147536 polypeptide=Lus10035619 locus=Lus10035619.g ID=Lus10035619.BGIv1.0 annot-version=v1.0 ATGGCGGCAATTCTTCGCAGCTACTTCTGCTGCAACAACTCATTCAAGCCTATCGAGAATCCCACAAAACAATCCAAAGCAATAAAGCAAGCTCAATTCT CCCCACGCTCTGCAAAATCATCATGGAGCAAACCCAACAGTCTGGCACACACTCGTTCCCTTACCGCACTGGTAGACTCGGGTTCGATGGACACCGCGCT CAAGCTGTTCGACAAAATGAACCATTCAGACACCTTCATATGGAACGTCATGATCAGAGGGTTCACACGTATTGGGCTGTTCTTGGAAGCCGTGGATTTC CACCGGAGGATGGAGCGAGATGGGGTTAGGATCGATCACTTCACTTTCCCCTTCGTGATCAAAGCGTGCGGGGAGTTGTTAGATTTGAGTGAAGGGGAGA GGGTTCACGGAAAGGTGATTAAGCTCGGGTTGGATATGGACGTGTACGTGTGTAATTTTCTTGTGGAAATGTATTTCTCGTTTGGGTTGGTTGAGTCTGC GGAGAAGGTGTTTGATGGAATGCCCGTGAGAGACTTGGTTTCTTGGAACACTGTGATTGGTGGGTGTTTGGTGGTTGGAGATGGGTTGAGGTCGTTGGGT TGGTTCAGGGAGATGGTTCGGTCGATGGTCGTACCGGATCGGGTTAGTTTCATTAGTGCTCTTGGGGCTTGTTCTGTAGTGAGCTGTTTGAAGTCTGGGA AGGAAGTTCATTGTCAAGTGATAAGAAAAGGGATTCATTTGGATGTTATGGTTGGGACATCTCTTGTGGATATGTATGGTAAATGTGGTGAAGTTGGGTA TGCGGAGAGGGTGTTCAGTGGGATCCTATTGAAAAATGCTGTTCTTTGGAATGCTCTGATCAGTGCTTATGCTGCAAGTGAGAAGTACTTGGAGTCCTTG GCTTGCTTGAAAGTAATGCAAGAGGATCACATAATGGTTCCAGATTCTGTTTCCATGATAAATGTGCTCCCTTCTTGTTCGCAATTGGGAGGTCTAAAGG AGATTAAATCCATCCATGGCTATGCAATTAGAAAGCTTCTTCTGCCTCAAATAGTACTGGAAACTGCTCTGGTTGATGCTTATGGAAAATGTGGAGCAGT GAGATCGGCAGAGCAGCTTTTTGGGAGAATTAATGAAAAGAACTTGGTGTCATGGAACACCATGATTGCTGTTTATGTACAGAATGAAAAGCATGAAGAA GCTCTTGAACTGTTTCAGGACTTGTGGTGGTTGAAGAACCTTAAACCAGACGCCATCACAGTTGCTAGCGTTCTTCCTGCCTATGCTGAACTAGCTTCGT TAAGCGAGTGCAAGCAGATCCACGGTCACATTGTGAAACTCGGTTTAAATACCGTACTTTACAATGCTCTTATTCATGCTTATGCAAAATGCGGGGATCT CCAGACTGCAAGGACGATTTTTGATGAAATGTCGGGTAAGAACTCGGCTTCGTGGAACACTATGATATTGGCTTATGCTATGCATGGATGTGGGGAAACT GCTATCAACTTGTTCTCATCCATGAAGGAAAGCGGTATTGAACCGGATCATGGCACTTTCGTTTCCCTGATGTATGCTTGCAGCATTTCTGGCCTGGTGA ACAAGGGTTGGGAATTCTTCAATGCAATGAAACCCGAATACAATATTGATCCAGTGGTTGAGCATTATGGCTGTGTGGTAGATTTTCTCGGAAGTTCCGG AGATCTCAATGCAGCGAAGGAGTTCATCAAAGGGATCCCATTGGTAGCACAAACTACAGCAAGAATCTGGGGTTCATTACTAGCTGCAAGCAGGAACAAC AATGACCTGGAGTCAGCTGAACTAGCTGCCAAGGAAATCTTGTCTCTTGAACATGACAACACCGGTTGCTATATCTTGCTTTCAAAGATGTACGCTGAAG CCGGGAGGTCAGACGATGCGAACAGGATTAAATCTCTGATGAAGGAGAAAGGGCTAAAGAAAACAAATGGATGTTGCAAAGTAGAGACTGAAGAACGTAA GAGCCAGAGGTTCATTAACAATGACAAGACCAACCCACAGACAAACATGATCATTGAGGTCCTAGATGTGATGTTAAAGAAAACAGGAGAGGAAAGCATC CATGCCTATTCGTGTTCTAAGTTCATACCAGCGGACTTAATAAAGAAGAGAGCCAATTCACCGAAGCTTCACAGTGTCAAACTTGCTATCGGCTTTGGCT TGATATCAACAGCTGTTGGGAAGCCTGTTATCATCAGAAAGAACCTTAGAGTCTGCCAAGATTGCCATCAGGTAGCAAAGAAGATCTCTCTAGCTTCTAA CAGAGAGATAATGATTAGAGATCCGAAAGTTTTCCACCGTTTCAATGGTGGGGGTTGTTCTTGTGGGGATTACTGGTAG
AA sequence Show only first row Show all	>Lus10035619 pacid=23147536 polypeptide=Lus10035619 locus=Lus10035619.g ID=Lus10035619.BGIv1.0 annot-version=v1.0 MAAILRSYFCCNNSFKPIENPTKQSKAIKQAQFSPRSAKSSWSKPNSLAHTRSLTALVDSGSMDTALKLFDKMNHSDTFIWNVMIRGFTRIGLFLEAVDF HRRMERDGVRIDHFTFPFVIKACGELLDLSEGERVHGKVIKLGLDMDVYVCNFLVEMYFSFGLVESAEKVFDGMPVRDLVSWNTVIGGCLVVGDGLRSLG WFREMVRSMVVPDRVSFISALGACSVVSCLKSGKEVHCQVIRKGIHLDVMVGTSLVDMYGKCGEVGYAERVFSGILLKNAVLWNALISAYAASEKYLESL ACLKVMQEDHIMVPDSVSMINVLPSCSQLGGLKEIKSIHGYAIRKLLLPQIVLETALVDAYGKCGAVRSAEQLFGRINEKNLVSWNTMIAVYVQNEKHEE ALELFQDLWWLKNLKPDAITVASVLPAYAELASLSECKQIHGHIVKLGLNTVLYNALIHAYAKCGDLQTARTIFDEMSGKNSASWNTMILAYAMHGCGET AINLFSSMKESGIEPDHGTFVSLMYACSISGLVNKGWEFFNAMKPEYNIDPVVEHYGCVVDFLGSSGDLNAAKEFIKGIPLVAQTTARIWGSLLAASRNN NDLESAELAAKEILSLEHDNTGCYILLSKMYAEAGRSDDANRIKSLMKEKGLKKTNGCCKVETEERKSQRFINNDKTNPQTNMIIEVLDVMLKKTGEESI HAYSCSKFIPADLIKKRANSPKLHSVKLAIGFGLISTAVGKPVIIRKNLRVCQDCHQVAKKISLASNREIMIRDPKVFHRFNGGGCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	0	1
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	2.4	0.8792
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011563 [exp]	5.1	0.8368
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	6.5	0.8583
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	6.6	0.8639
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	7.2	0.8692
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	9.5	0.8414
AT2G35030			Pentatricopeptide repeat (PPR)...		Lus10022655 [exp]	10.0	0.7708
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	10.5	0.8607
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	14.4	0.8557
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	15.2	0.8204

Compare expression of checked genes

Lus10035619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.