Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 219 / 3e-69 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 216 / 2e-68 Chitinase family protein (.1) AT2G43580 197 / 1e-60 Chitinase family protein (.1) AT2G43610 191 / 3e-58 Chitinase family protein (.1) AT2G43570 188 / 5e-57 CHI "chitinase, putative", chitinase, putative (.1) AT2G43620 186 / 2e-56 Chitinase family protein (.1) AT3G47540 150 / 2e-43 Chitinase family protein (.1.2) AT1G56680 152 / 4e-43 Chitinase family protein (.1) AT4G01700 147 / 3e-41 Chitinase family protein (.1) AT2G43600 144 / 3e-40 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003231 [exp] 377 / 6e-132 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003230 [exp] 372 / 1e-129 AT3G54420 240 / 8e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035618 [exp] 293 / 1e-98 AT2G43590 229 / 1e-75 Chitinase family protein (.1) Lus10035621 [exp] 266 / 1e-85 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024367 [exp] 253 / 4e-83 AT3G54420 226 / 3e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003587 [exp] 251 / 2e-82 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10024368 [exp] 246 / 4e-80 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10032794 [exp] 245 / 6e-80 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10010861 [exp] 243 / 5e-79 AT2G43590 263 / 6e-89 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 233 / 9e-75 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 229 / 5e-73 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 226 / 6e-72 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 224 / 4e-71 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 224 / 5e-71 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 210 / 1e-65 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 209 / 2e-65 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G141700 [exp] 159 / 2e-45 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 157 / 9e-45 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 154 / 2e-44 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10035620 pacid=23147669 polypeptide=Lus10035620 locus=Lus10035620.g ID=Lus10035620.BGIv1.0 annot-version=v1.0 ATGGCAAAATTTCTTCAGCTACTCATAGCAGCCATAGCCACCCTCGTGGCCTCTTTGGCCATCACCACCACCGTCGTGGAAGCGCAGGTTGCTAACATAG TCACCCCAGCTTTCTTCAACGGCATCCGCAACCGCGGCGGCAACAATTGTGCCGGCAAGTCATTCTACACTCGCGAGGCCTTTATCCAGGCTGCTAGATC CTACCCTAGCTTCGGCAACCGTGGCTCCGACGCCGGCTCCAAGCGCGAGATCGCCGCCTTCTTCGCCCATGTCACCCACGAAACCGGAAGTATGTGCTAC ATTGAAGAAATTAACAAGGCGGAATATTGCGATCGGAGCCAGTACCCATGTGCTCAGGGGAAGAGATACTACGGGCGGGGCCCACTTCAGCTGACGTGGA ACTACAACTATGCGGAAGCCGGGAAAGCCAACGGATTTGACGGGGTGGCGAACCCAGACATCGTGGCTAGGGACCCGGTGCTTGCGTGGAGGACCGCGTT GTGGTTTTGGATGACAAATGTCCGTGCCGTCCTTCCTCAGGGTTTCGGAGCCACCATCCGCAAGATTAACGGCATGGAATGTAACGGCGGAAACACTCCT GCCGTCAACGCTCGGGCCGGACCCGGATGTAAGGGAAAGCAGTTCTACAAGCGGAGAGATTTCCTCAAGGCTGCCAAATCTTACCCTCGCTTCGGTAACT TCCCGTCCGACCACAAGGAATCCCGGCGCGAGGTTGCCGCCTTCTTTGCTCATGTCACCCACGAGACCGGTCAGTTGTGCTATGTAGAAGAAACAGAACG AGGTAAGTACTGCGATTCGTCGGCGGTGGAATACCCGTGCGTCCCCGGGAAACAGTACTACGGTCGGGGCCCACTTCAGCTGCCGTGGAACTACAACTAC GGTGCGTGCGGGAAGGCCAACGGATTTGACAGTCTGAGGAACCCGGAAATAGTGGCGACGGATCCGGTGCTGACGTGGAAGACGGTGTTGTGGTTCTGGA CGACGAGCGTTCGTCCCACGGAGAGGAAGGGATCCGGGGAGACGATTCATAGAGTGAACGGGTTGGAATGCCACGGTGGAAACACTGATGAAGTAGACGA TCGGGTTAGGTATTATATTGAGTTTTGTAAGCAGCTGGACGTCACCCCTGGCCAGCATATTAGGTGTTAG
AA sequence Show only first row Show all	>Lus10035620 pacid=23147669 polypeptide=Lus10035620 locus=Lus10035620.g ID=Lus10035620.BGIv1.0 annot-version=v1.0 MAKFLQLLIAAIATLVASLAITTTVVEAQVANIVTPAFFNGIRNRGGNNCAGKSFYTREAFIQAARSYPSFGNRGSDAGSKREIAAFFAHVTHETGSMCY IEEINKAEYCDRSQYPCAQGKRYYGRGPLQLTWNYNYAEAGKANGFDGVANPDIVARDPVLAWRTALWFWMTNVRAVLPQGFGATIRKINGMECNGGNTP AVNARAGPGCKGKQFYKRRDFLKAAKSYPRFGNFPSDHKESRREVAAFFAHVTHETGQLCYVEETERGKYCDSSAVEYPCVPGKQYYGRGPLQLPWNYNY GACGKANGFDSLRNPEIVATDPVLTWKTVLWFWTTSVRPTERKGSGETIHRVNGLECHGGNTDEVDDRVRYYIEFCKQLDVTPGQHIRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10035620 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	3.2	0.8721
AT5G61520			Major facilitator superfamily ...		Lus10009656 [exp]	3.5	0.8007
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	4.7	0.8374
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	6.6	0.8007
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	7.3	0.7842
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	9.8	0.8175
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	10.6	0.8321
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	11.2	0.8088
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	12.2	0.8016
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	15.9	0.8209

Compare expression of checked genes

Lus10035620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.