Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 243 / 3e-78 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 230 / 3e-73 Chitinase family protein (.1) AT2G43590 229 / 6e-73 Chitinase family protein (.1) AT2G43620 215 / 2e-67 Chitinase family protein (.1) AT2G43610 208 / 1e-64 Chitinase family protein (.1) AT2G43570 190 / 1e-57 CHI "chitinase, putative", chitinase, putative (.1) AT3G47540 171 / 6e-51 Chitinase family protein (.1.2) AT1G56680 172 / 1e-50 Chitinase family protein (.1) AT4G01700 170 / 5e-50 Chitinase family protein (.1) AT1G02360 162 / 5e-47 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035618 [exp] 340 / 9e-117 AT2G43590 229 / 1e-75 Chitinase family protein (.1) Lus10003226 [exp] 313 / 6e-105 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010861 [exp] 300 / 4e-101 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 299 / 9e-101 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10003231 [exp] 296 / 9e-100 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024368 [exp] 295 / 4e-99 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10035624 [exp] 289 / 1e-95 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10035625 [exp] 288 / 2e-95 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10032794 [exp] 282 / 4e-94 AT2G43590 265 / 6e-90 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 278 / 5e-92 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 264 / 2e-86 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 263 / 5e-86 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 262 / 1e-85 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 260 / 8e-85 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 249 / 2e-80 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 240 / 5e-77 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 179 / 1e-53 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.014G111800 [exp] 178 / 5e-53 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.009G141700 [exp] 155 / 7e-44 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10035621 pacid=23147357 polypeptide=Lus10035621 locus=Lus10035621.g ID=Lus10035621.BGIv1.0 annot-version=v1.0 ATGGAAAAGTTGTCTCTAGGACACGTTCTTCTCCTCCTCCTTGCAGTATCTTTGAATTCTTCCTTCGCGGATACTGATCATGATCACTCCGACGACGAGG GATTGGCCAACAACATCTACGTGGCAAGCGGATGCAGCGGCGGTGGGGAAGAACAATCAGTAGGCGGCGAAATAGAGATGCCGACCGATGATCCAGGAAC GTTGGTACTGGAATATTCTGGTCGAGTGGGGATCGCGGTGAAGAGCGTGGTGACACAAGAATTCTTCGACGGCATAATAAGTAAAGCAGATCCAAGATGT GCGGGCAAGAAGTTCTACACAAGAGGCTCCTTCTTGAACGCAATCAAGTCATATCCCATGTTTGGTAAGCTCGCCAATAATACGGCCTCCAAGCGTGAGA TTGCTGCATTCTTCGCCCACGTCACCTACGAAACTGGGGCCACCGAACCGTTTCTAGCTATAAATACAATCCTGCATGCACCACTCTCCCTCCATCATAC ACTCACAATAGTCACACCACCACTATCTTACATTGTCTTCAACATGGGAAACCTTCAACTTCTCACCGCCACCATAGCCATACTTATGGCCTCGTCCGCT GTCCCTATCACGGTCGTGGATGCTCAAGGTCAGGGTCCGTTAGCCAACATCGTCACTCCTGCTTTCTTTGAAGGCATTCGCAACAGTGCCCCCAACAACT GTTCCGGGAAATCATTCTACACTCGGGAGGCCTTTCTTCAGGCCGCAAGATCCTACCCTCTGTTCGCCGTTCAAGGTCTCTCGGCAGAAGCTTCTAGGCG TGAGATCGCAGCCTTCTTCGCCCATGTCACCCACGAAACTGGAAATTTGTGCTACATTGAGGAAATTCAGAAAGGAACATTCTGCGACGCTAGTTCCAAA CAATGGCCATGTACTCCAGGGAAACGATACTATGGCCGTGGACCTCTCCTACTGACGTGGAACTTCAACTATGGGCCGTGCGGAAGGGCAAACAACTTCG ACGGCTTGAAGAACCCTGACATCGTGGCGAGGGACCCAGTCGTCGCGTGGAAGGCGTCTCTCTGGTCCTGGATGAAAAATGTTCACCCCGTTGTGGACCG CGGGTTTGGAGCCACCATCCGAGCCATTACCGGTGGCTTGGAGTGCGGCGGCAAAAACCCTGCTGCTGTTACTGCTCGCGTTAAGTACTACGAGAACTAC TGCAAAAGCTTCAATGTTTCCCCGGGACCTAATGTCAGATGTTAA
AA sequence Show only first row Show all	>Lus10035621 pacid=23147357 polypeptide=Lus10035621 locus=Lus10035621.g ID=Lus10035621.BGIv1.0 annot-version=v1.0 MEKLSLGHVLLLLLAVSLNSSFADTDHDHSDDEGLANNIYVASGCSGGGEEQSVGGEIEMPTDDPGTLVLEYSGRVGIAVKSVVTQEFFDGIISKADPRC AGKKFYTRGSFLNAIKSYPMFGKLANNTASKREIAAFFAHVTYETGATEPFLAINTILHAPLSLHHTLTIVTPPLSYIVFNMGNLQLLTATIAILMASSA VPITVVDAQGQGPLANIVTPAFFEGIRNSAPNNCSGKSFYTREAFLQAARSYPLFAVQGLSAEASRREIAAFFAHVTHETGNLCYIEEIQKGTFCDASSK QWPCTPGKRYYGRGPLLLTWNFNYGPCGRANNFDGLKNPDIVARDPVVAWKASLWSWMKNVHPVVDRGFGATIRAITGGLECGGKNPAAVTARVKYYENY CKSFNVSPGPNVRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	0	1
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006690 [exp]	1.0	0.9630
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10007034 [exp]	3.2	0.9412
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	3.5	0.9390
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	3.7	0.9229
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	4.2	0.9567
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	4.6	0.9465
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	6.3	0.9353
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	6.9	0.9455
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10018306 [exp]	9.2	0.9236
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10014681 [exp]	10.2	0.9354

Compare expression of checked genes

Lus10035621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.